Pairwise Alignments

Query, 587 a.a., DEAD/DEAH box helicase from Rahnella sp. WP5

Subject, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

 Score =  615 bits (1586), Expect = e-180
 Identities = 310/583 (53%), Positives = 402/583 (68%), Gaps = 9/583 (1%)

Query: 6   LRPYQQDAVDATLRHFRQHDEPAVIVLPTGAGKSLVIAELARVARGRVLVLAHVKELVAQ 65
           LR YQQ AVDA + HF++  + AV+VLPTGAGKS+VIAELAR+ARGRVLVL HVKELVAQ
Sbjct: 11  LRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELARIARGRVLVLTHVKELVAQ 70

Query: 66  NHSKYLSYGLEADIFAAGLNLKQSSGKVIFGSVQSVAPNLAEFSGEFSLLIVDECHRISD 125
           N  K      EA I++AGLN K S GK +  S+QS A  L +F+  FSL+I+DECHR+S 
Sbjct: 71  NAQKVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARALGQFNEPFSLVIIDECHRVSL 130

Query: 126 DDNSQYQQIIGHLKAQNPRLRLLGLTATPYRLGKGWIYQYHHQGIVRGDANSLFRDCIYE 185
           +  SQYQQ++ HL+ +NP+L+LLGLTATPYRLG GWIY+ H+ G V      +F  CI+E
Sbjct: 131 EKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHGKVGSPELGIFEQCIFE 190

Query: 186 LPLRYMIKNGFLVPPERLDMPVVSYDFSRLQASSNGLFSEADLNDELRQQKRITPHIISQ 245
           LP+R +IK G+L  P   D     YDFS+++A+ NG + EA +ND L    R T  I+ Q
Sbjct: 191 LPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHAGRATTAIVKQ 250

Query: 246 IIEFAQDRKGVMIFASTVEHAGEIFGLLPK---GEAALISAQTHAVERDRLITAFKAQQL 302
           +IE +  R+G++IFA+TV HA EI   L K    + A+++AQT   ERD LI  FKA++L
Sbjct: 251 LIELSHHRQGIIIFAATVRHAEEIVSQLNKEHREQTAIVTAQTPDNERDELIERFKAREL 310

Query: 303 RYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 362
           ++LVNV+VLTTGFDAPHVDLIAILRPT SVSL+QQ++GRGLR+  GK DCL++DYA N +
Sbjct: 311 KFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRICEGKKDCLVIDYAANGY 370

Query: 363 DLFTPEVGSHKPAGDNKPVQVFCPACGFANIFWGKTTEDGTVIEHFGRRCQGVLEDDEGN 422
           DL+ PEVG  KP   + PVQV CP C FANIFWG T +DG +IEHFGRRCQG++E   G 
Sbjct: 371 DLYFPEVGQAKPNSKSVPVQVHCPVCQFANIFWGLTDDDGDIIEHFGRRCQGIVE-HHGK 429

Query: 423 REQCDFRFRFKSCPHCGAENDIAARRCHQCQEILVDPDDMLKAALRLKDALVLRCGGMNL 482
           ++QCDFRFR KSCP CG ENDIAAR C  CQ  L+DPD  LK  L  +   + RC  M L
Sbjct: 430 KQQCDFRFRAKSCPDCGQENDIAARICQHCQSTLIDPDKRLKQVLNKQHHHLFRCQHMTL 489

Query: 483 QNGRDDKGEWLKITYYDEDGADVSERFRLTTPAQRMAFLHNFLRPHQRAPGV-PLEWNTA 541
               DD G+ LK+ Y D DG + +  F+L TPAQ  A    F+ PH R PG+ P ++   
Sbjct: 490 M---DDAGD-LKVQYLDIDGNEFNRHFKLQTPAQWRALYALFIFPHSRTPGLKPKQYKQV 545

Query: 542 ADIVAQQILLRHPDFVVARMKGQFWQVREKMFDYEGRYRRANE 584
           ++++A     + PD ++ +   + W + E  FDY+GRY+  N+
Sbjct: 546 SELIADSATFKMPDLLLLKKHKKGWDLLESYFDYQGRYQTENK 588