Pairwise Alignments

Query, 587 a.a., DEAD/DEAH box helicase from Rahnella sp. WP5

Subject, 982 a.a., helicase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.8 bits (216), Expect = 2e-21
 Identities = 98/352 (27%), Positives = 158/352 (44%), Gaps = 43/352 (12%)

Query: 29  VIVLPTGAGKSLVIA-ELARVAR----GRVLVLAHVKELVAQNHSKY---LSYGLEADIF 80
           +IV  TG GK+++ A + AR  +       L +AH +E++ Q    Y   L      +++
Sbjct: 271 LIVAATGTGKTIISAFDFARFYKQHPEANFLFVAHRQEILQQALGAYRGVLKNNQFGELW 330

Query: 81  AAGLNLKQSSGKVIFGSVQSV---APNLAEFSGEFSLLIVDECHRISDDDNSQYQQIIGH 137
            A      +S K +F S+QS+     NL   +  +  +++DE H ++    S Y+ ++ H
Sbjct: 331 VA--EHTPNSYKHLFASIQSLNLQLDNLPLAADFYDYIVIDEVHHVAA---SSYRGLLEH 385

Query: 138 LKAQNPRLRLLGLTATPYRLGKGWIYQYHHQGIVRGDANSLFRDCIY-ELPLRYMIKNGF 196
            +   P + L+GLTATP R          H G+   D  + F   I  E+ L   I    
Sbjct: 386 FE---PTI-LVGLTATPER----------HDGV---DILADFCGVIAAEIRLPEAINQRH 428

Query: 197 LVPPERLDMPVVSYDFSRLQASSNGLFSEADLNDELRQQKRITPHIISQIIEFAQDRKGV 256
           L P +   +   + D   L  S  G +  A+L++      +    II  + E   D   +
Sbjct: 429 LCPFQYFAIDDET-DLRNLNWS-RGRYDVAELSNLYTHNDQRVTRIIRSLAETVTDIDSI 486

Query: 257 MIFASTV-----EHAGEIFGLLPKGEAALISAQTHAVERDRLITAFKAQQLRYLVNVSVL 311
              A  V     E+  + F L   G +A +    ++ ER     +  + +L  L  V + 
Sbjct: 487 KALAFCVSREHAEYMAKKFNL--SGISADVLTSDNSEERHEKRQSLVSGKLSILCVVDIF 544

Query: 312 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 363
             G D P VD +  LRPTES++++ Q +GRGLRL   K  C ILD+ GN  D
Sbjct: 545 NEGVDIPEVDTLLFLRPTESLTIFLQQLGRGLRLTDDKQCCTILDFVGNSRD 596