Pairwise Alignments

Query, 724 a.a., ATP-dependent DNA helicase DinG from Rahnella sp. WP5

Subject, 641 a.a., helicase c2 (RefSeq) from Shewanella loihica PV-4

 Score =  151 bits (381), Expect = 1e-40
 Identities = 176/683 (25%), Positives = 292/683 (42%), Gaps = 89/683 (13%)

Query: 17  ALQQQIPDFISRAPQRQMIAEVAKAFS-GDSARHLAIEAPTGVGKTLSYLIPGIAVSREE 75
           +L + I  +  R  Q+ M   V++    GD+   L +EA TGVGKT +YL+P +   ++ 
Sbjct: 18  SLSRHIKGYSCRVQQQTMATRVSETLQKGDN---LVVEAGTGVGKTYAYLVPALLSGKQ- 73

Query: 76  EKPLIVSTANVALQDQIFSKDLPLLKKIIPDL-KFTGAFGRGRYVCPRNLAAMSNENAQG 134
              +IVST +  LQ+Q+F KDLP L  I+    K     GR  Y+C + L        + 
Sbjct: 74  ---VIVSTGSKNLQEQLFFKDLPALLNILGIRPKVALLKGRSNYLC-QYLMEKQLSGVEV 129

Query: 135 DLGLFLGDELAPSSGEEQKLCKTLETALSRYEWDG-LRDHYQKTIDDPLWIKISTDKANC 193
           + G  L D L       Q +             DG +   Y    + P    + + K +C
Sbjct: 130 NDGKILDDLLRIDQWASQTV-------------DGDIGSLYAVPENSPAIPLVVSSKESC 176

Query: 194 LSRNCHYFRECPYFVARKEIESADVVVTNHALVMAALESESV----LPPAKDLLLVLDEG 249
           + + C ++  C    AR +   A ++V NH L  A    +      L P  D++ + DE 
Sbjct: 177 IGKACDHYEACFTRKARAKALDAKIIVVNHHLFFADRILKETGFAELLPDSDVV-IFDEA 235

Query: 250 HHLPEVARDALEVEAEITAVWNNLQLDNFVRQIEQCLALFTPK---NPPPLTHAERLHNH 306
           H LP++A         +T     L + + +R +E+   L+  +   +P       R H  
Sbjct: 236 HLLPDIA---------VTYFGQQLSIKSLIRLLERFNELYRTQMADSPQIGAMTARCHTQ 286

Query: 307 CAEMRELLLLIEQAVSQHLPPAEPEAEYRFELGVLPPELTEQCSRLFKLTDGLRSLAEYM 366
               + LL   E+   + L   +   E  + L             + +LT     L  Y+
Sbjct: 287 LLHWQGLLFATEERDWRRLIGDKALMEASWAL-------------VSELTAYRTMLLGYL 333

Query: 367 VNDLSEKTGKHDIMRLHRAILHMSRMQGYLETMSKLWRLAALDKASNAPIGKWVTRSYFD 426
             + +   G             + ++ G L  ++   +    D A +   G         
Sbjct: 334 GRNEAFDDG-------------VEKIDGLLSKLTVFIQCDNPDSAYSIDYG--------- 371

Query: 427 NQTHLVFHCAGIRVSEQLEKMLWRKVPHVVITSATLRSLNSFSRLQEMSGLTEKAGDRFV 486
              HL    + I+V+++ + +    V  +  TSATL+     S   +  GL EKA     
Sbjct: 372 -YQHLTLRISPIKVAKECQSLFSPDVSWI-FTSATLQINRDLSLFTKAMGL-EKANTSI- 427

Query: 487 SLDSPFNHVEQGKLVIPQMTLEPVMANEAAHIQEMADFFRAELAKGGHTGQLVLFASNRA 546
            LDSPF++  Q    +P+  L  V + E A  Q +    +A  A  G T   +LF S+R 
Sbjct: 428 -LDSPFDYRRQSLFCVPRH-LASVTSQERAARQLVEVAVKAINAAKGRT--FMLFTSHRM 483

Query: 547 LQQFVALLPD-LRLMLLVQGDQPRYRLVEEHRKRVAAGTTSVLIGLQSFAEGLDLKGELL 605
           L     +L   +   LLVQG   +  L++++R+   A    VL+G  +F EG+D++G+LL
Sbjct: 484 LNLVAVMLQGRIDYPLLVQGQAGKQTLLKKYRQLGNA----VLLGTGAFWEGVDVRGKLL 539

Query: 606 TQVHIHKIAFPPIDSPVILTEGEWLKTLKRYPFEVQSLPSASFNLIQQVGRLIRSHECTG 665
           + V I K+ F   D  +     + ++   + PF   SLP A   L Q VGRLIR  +  G
Sbjct: 540 SCVIIDKLPFVSPDDNLYKARADGVQREGKDPFMTLSLPQAVIALNQGVGRLIRDEKDRG 599

Query: 666 EIVIYDKRLLTKSYGARLLAALP 688
            +++ D R++ + YG   + +LP
Sbjct: 600 VLILCDNRIVNRPYGQAFINSLP 622