Pairwise Alignments

Query, 328 a.a., autoinducer 2 ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 308 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25-INTG

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 9   SACVVSACMLFTTPSFAAKPYDIAVVAKVTGIPWFTRMEVGVKEAAQKLDVNAYQVGAST 68
           S  V +  +LF+  +FAA  Y I V        + T +  G++ AA++ DV   Q   + 
Sbjct: 5   SLIVATLVLLFSQWTFAA--YRIGVSIARVDDNFMTYVRTGLEAAAKQQDVQI-QFEDAQ 61

Query: 69  PDPAQQVKVIEDLIAKKVDAIIVVPNDAKVLEPVLKKA-RDQGIVVLTHESPDQQIGQWD 127
            D  +Q+  +E  + +KVDA+IV+P D      + + A   +  +V  +  PD++     
Sbjct: 62  GDVVRQLNQVEGFLNQKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPDERTLPKG 121

Query: 128 IETIDSQ--KYAEANMDELAKDMGGKGGYAIYVGSLTVPLHNAWADAAIKYQKEKYPDMH 185
           + T+ S   +  +  M  LA+ +GGKG  AI +G L     +   + A +  K+ +P + 
Sbjct: 122 VVTVASNDIEAGQLQMRYLAEKLGGKGNVAIIMGDLAQNATHDRTEGAKQVLKD-FPGI- 179

Query: 186 EVTSRLPVAENIDKSYSTTLDLMKTYPDLKGIIGFGSLGPIGAGQAVQQK-RAKNKIAVV 244
           +V  +        K    T + +        I+       IGA  A+QQ  + K +IA+V
Sbjct: 180 KVVEQQSAEWQRSKGMDLTSNWLLAGTQFDAIVANNDEMAIGAAMALQQAGKTKGEIAIV 239

Query: 245 GIAMPAQAAPYLMRGDIKKVLLWDPKDAGYALVTVADQMLQGKEVTKDL 293
           GI         + RG +   +  DPK      V  A +M++G+ +  ++
Sbjct: 240 GIDGLPDGLAAIKRGMLTASVFQDPKAQATQAVHAAVRMIKGEPIEPEV 288