Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Rahnella sp. WP5

Subject, 914 a.a., DNA polymerase I from Pseudomonas stutzeri RCH2

 Score = 1099 bits (2843), Expect = 0.0
 Identities = 580/937 (61%), Positives = 694/937 (74%), Gaps = 29/937 (3%)

Query: 4   IAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYTPSHVAVVFD 63
           +++ PLILVDGSSYLYRA+HA PPLT S G+PTGA+ GVLNML SL  QY  S  AVVFD
Sbjct: 1   MSQAPLILVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRRQYPDSPFAVVFD 60

Query: 64  AKGKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAL 123
           AKG TFRD LFE YKSHRPPMPDDLRSQ+EPLH  V+A+G+PLL V GVEADDVIGTLA 
Sbjct: 61  AKGPTFRDALFENYKSHRPPMPDDLRSQVEPLHASVRALGMPLLCVEGVEADDVIGTLAR 120

Query: 124 EAELAGHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFLALM 183
           +    G  V+ISTGDKDMAQLV P VTL+NTM  ++   + V  K+GV P LIIDFLALM
Sbjct: 121 QCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKTKFGVGPELIIDFLALM 180

Query: 184 GDSSDNIPGVPGVGEKTAQALLQGI-GGLDALYADLDKVSTLSFRGAKTMAAKLADNKDV 242
           GD  DNIPGVPGVGEKTA  LL GI GGL  LY +LD+V+ L  RGAK++ AKLA+++D 
Sbjct: 181 GDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYDNLDQVAGLPIRGAKSLGAKLAEHRDA 240

Query: 243 AYLSYQLATIKTDVKLDLTCAELTVSEPDADELHKLFGRYEFKRWLADVESGTWLSGKKS 302
           A++SY+LATIK DV LD+   +L   EP  + L  L+   EFK WL D+     L   K+
Sbjct: 241 AFMSYELATIKIDVPLDVEVGDLMPGEPHREALIALYRELEFKNWLDDL-----LREAKA 295

Query: 303 AGK----APAAAKKSAQAEDTTSAAVIEPNQLSQDGYVTILDQATLDEWIGYLKGSEVFA 358
           AG+     P      A+A+                 Y T+L+QA  + W+  LK +E FA
Sbjct: 296 AGENCEVQPEGCSIQAEAQ-----------------YETLLEQADFERWLDRLKTAECFA 338

Query: 359 FDTETDGLDTLTANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEVLKQLKPILEDEK 418
           FDTET  +D   A L+G+SFA E G+AAY+P+ H Y+  P QL+ D VL  LKP+LED  
Sbjct: 339 FDTETTSIDAQRAELVGVSFAIEPGQAAYVPLRHSYMGVPQQLELDAVLAALKPLLEDPA 398

Query: 419 QRKVGQNLKFDRGVLLRYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSF 478
           + K+ Q+ K+D  VL+ Y IE++G+ FDTMLESYVLD+ + RHDMDSLA +YLG  T+ F
Sbjct: 399 KTKICQHGKYDMNVLMHYGIEMRGMTFDTMLESYVLDATATRHDMDSLALKYLGRGTIRF 458

Query: 479 EEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEMPL 538
           E+IAGKG  QLTF+QIA+EQA PYAAEDADVTL+LHQ L  ++ ++ SL  V T+IEMPL
Sbjct: 459 EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPL 518

Query: 539 VPVLSHIERTGVLIDQNILAAHSKELAIRLNELENKAHELAEEPFNLSSTKQLQAILYEK 598
           VPVL+ IER G L+D  +L   S EL  +L +LE +A E+A E FNL S KQL AILY+K
Sbjct: 519 VPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAFEIAGEEFNLGSPKQLCAILYDK 578

Query: 599 QKLPILKKTPGGAPSTNEEVLAELA-LNYPLPKVILEYRGLAKLKSTYTDKLPLMINPQS 657
              P++ KT GG PST E VLAELA  +YPLPKVI+++R L+KLK TYTDKLP  INP++
Sbjct: 579 LGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRT 638

Query: 658 GRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQIELR 717
           GR+HTSYHQAVTATGRLSSSDPNLQNIP+R  EGRRIRQAF+A   Y +LAADYSQIELR
Sbjct: 639 GRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELR 698

Query: 718 IMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSAFG 777
           IMAHL++D GLL AF    D+HRATAAEVFG PLE+VS +QRRSAKAINFGLIYGMSAFG
Sbjct: 699 IMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFG 758

Query: 778 LSRQLNIPRKESQRYMDLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSN 837
           L++Q+++ RKE+Q Y+D YF RYPGVL YMERTRTQA+EQGYVETL GRRLYLP+I S N
Sbjct: 759 LAKQIDVGRKEAQEYIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKN 818

Query: 838 AMRRKGAERAAINAPMQGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKD 897
              RKGAER AINAPMQGTAADIIKRAMI+V  WL Q     AR+I+QVHDELV EV +D
Sbjct: 819 GAMRKGAERTAINAPMQGTAADIIKRAMIAVDGWL-QDSGLDARVILQVHDELVLEVRED 877

Query: 898 DVEVASEKIRNLMEASMTLAVPLKVDVGTGENWDQAH 934
            VE   E I  LM  +  L VPL V+ G G NWD+AH
Sbjct: 878 LVEQVREAICPLMSGAAQLDVPLLVEAGVGNNWDEAH 914