Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Rahnella sp. WP5

Subject, 924 a.a., DNA polymerase A (NCBI) from Rhodospirillum rubrum S1H

 Score =  690 bits (1780), Expect = 0.0
 Identities = 403/947 (42%), Positives = 561/947 (59%), Gaps = 50/947 (5%)

Query: 9   LILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYTPSHVAVVFDAKGKT 68
           L LVDGS Y++RAYH+ PP+T + G P  A+YG   ML  LL      H+AV+FD    +
Sbjct: 7   LYLVDGSGYIFRAYHSLPPMTRTDGTPVNAVYGFTAMLMKLLADMDADHLAVIFDKARVS 66

Query: 69  FRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLALEAELA 128
           FR+E++  YK+ RPP P+DL  Q   + + V+A  +P +   G EADD+I T A  A   
Sbjct: 67  FRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDLIATYAKRARAE 126

Query: 129 GHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFLALMGDSSD 188
           G  V + + DKD+ QLV  GV L + M N  +GP EV EK+GV P  +ID  AL GD+ D
Sbjct: 127 GAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPDKVIDVQALAGDAVD 186

Query: 189 NIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTLSFRGAKTMAAKLADNKDVAYLSYQ 248
           N+PGVPG+G KTA  L+   G L+ L A   ++     R +      L D+ + A +S Q
Sbjct: 187 NVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRRQS------LLDHAEAARISLQ 240

Query: 249 LATIKTDVKLDLTCAELTVSEPDADELHKLFGRYEFKRWLADVESGTWLSGKKSAGKAPA 308
           L  ++ DV++  T A+   +EPDA+ L        F+  LA V +      K      PA
Sbjct: 241 LVRLRDDVEVSETLADFATAEPDAEVLAGFLAENGFRSLLARVTAVA--HAKAGTTPQPA 298

Query: 309 AAKKSAQAEDTTSAAVIEPNQLSQDGYVTILDQATLDEWIGYLKGSEVFAFDTETDGLDT 368
           AA                    + D YV +   A L  WI   + + + A DTETD L  
Sbjct: 299 AAP-------------------ADDDYVLVNTLAELGVWIAKARAAGLVAIDTETDSLKA 339

Query: 369 LTANLIGLSFATEAGKAAYLPVAHDYLDA----------PVQL--DRDEVLKQLKPILED 416
             A L+G+S A   G+A Y+P AH    A          PV    D+   L  L  +L D
Sbjct: 340 RRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLRD 399

Query: 417 EKQRKVGQNLKFDRGVLLRYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTV 476
               KVG NLKFD  VL    +       DTM+ SYVLD     H MD LA  +LG +T+
Sbjct: 400 PGVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTI 459

Query: 477 SFEEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEM 536
           +FEE+ GKGK Q+TF+Q+ L++A  YAAEDADVTL+L+  L  R+ + E +  V   ++ 
Sbjct: 460 TFEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLRLYLLLRDRLLK-EHMVRVHETLDR 518

Query: 537 PLVPVLSHIERTGVLIDQNILAAHSKELAIRLNELENKAHELAEEPFNLSSTKQLQAILY 596
           P+V +L+ +E  GV +D   L A S + A R+ +LE++ H LA   FN++S KQL  +L+
Sbjct: 519 PMVRILTDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEVLF 578

Query: 597 EKQKLPILKKT-PGGAPSTNEEVLAELALN-YPLPKVILEYRGLAKLKSTYTDKLPLMIN 654
           E+  L   KK+   GA ST+ +VL +LA   + LP  +L++R  AKLK TYTD L   I+
Sbjct: 579 EEMSLTGGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEID 638

Query: 655 PQSGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQI 714
            ++GRVHT+Y   VTATGRLSS+DPNLQNIPVR++ GR+IR+AFIA   +++++ADYSQI
Sbjct: 639 ERTGRVHTTYGLTVTATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQI 698

Query: 715 ELRIMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMS 774
           ELR++AH++    L +AFAEGKDIH  TA++VFG P+E +    RR AKAINFG+IYG+S
Sbjct: 699 ELRLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGIS 758

Query: 775 AFGLSRQLNIPRKESQRYMDLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIK 834
           A GL++QL + R E+  ++  YF R+P +  YME  + +A   G+V T  GRR+ +P I+
Sbjct: 759 AHGLAQQLGVGRPEAAAFITAYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQ 818

Query: 835 SSNAMRRKGAERAAINAPMQGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEV 894
             N   R  AER AINAP+QG AADIIKRAMI++   L+Q      R+++QVHDEL+FE 
Sbjct: 819 DKNPAARAFAERQAINAPIQGGAADIIKRAMIALPPALEQAGL-ATRMLLQVHDELIFEA 877

Query: 895 HKDDVEVASEKIRNLMEASMTL-------AVPLKVDVGTGENWDQAH 934
            + + E A+  ++ +ME ++TL        VPL+VD G   +W +AH
Sbjct: 878 PEAEAETAAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASWAEAH 924