Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Rahnella sp. WP5

Subject, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  682 bits (1760), Expect = 0.0
 Identities = 409/972 (42%), Positives = 577/972 (59%), Gaps = 67/972 (6%)

Query: 5   AENPLILVDGSSYLYRAYHAF--PPLTNSAGEPTGAMYGVLNMLRSLLLQYTPSHVAVVF 62
           ++N L L+D  + +YRAY+AF   P  NS G  T A+ G +N L  +L +  PSH+ V F
Sbjct: 3   SDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPSHIGVAF 62

Query: 63  DAKGKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLA 122
           D  G TFR E FEQYK+ R   P+ +R  +  +  ++ A  +P+L V+G EADDVIGTLA
Sbjct: 63  DPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLA 122

Query: 123 LEAELAGHAVLISTGDKDMAQLVTPGVTLINTMNNA---ILGPDEVVEKYGVP-PSLIID 178
            EA   G    + T DKD  QLVT  V +    +     ++G +EV  K+ +  P+ +ID
Sbjct: 123 TEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVID 182

Query: 179 FLALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTLSFRGAKTMAAKLAD 238
            L LMGD+SDNIPG PGVGEKTAQ L+   G ++ L    D++     +GA  +  K+  
Sbjct: 183 MLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQL-----KGA--LKTKVET 235

Query: 239 NKDVAYLSYQLATIKTDVKLDLTCAELTVSEPDADELHKLFGRYEFKRWLADVESGTWLS 298
           NK++   S  LATIK DV + L   +L   + D D L ++F   EF+  +  V     L 
Sbjct: 236 NKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRV-----LK 290

Query: 299 GKKSAGKAP-AAAKKSAQAEDTTSAAVIEPNQ---------------------------- 329
            + SAG    A   K+A A+   S   + P +                            
Sbjct: 291 KENSAGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETL 350

Query: 330 --LSQDGYVTILDQATLDEWIGYLKGSEVFAFDTETDGLDTLTANLIGLSFATEAGKAAY 387
             L+ D Y  I  +    E I  L  S++ + DTET G + + A L+G+SF+    +A Y
Sbjct: 351 ETLNCD-YQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFY 409

Query: 388 LPVAHDYLDAPVQLDRDEVLK---QLKPILEDEKQRKVGQNLKFDRGVLLRYDIELKGIA 444
           +PV  +         R+E LK   + +P+ E+E   KVGQN+K+D  VL  Y +++KG  
Sbjct: 410 VPVPDN---------REEALKIVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGAL 460

Query: 445 FDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAG-KGKNQLTFNQIALEQAAPYA 503
           FDTM+  YVL     RH MD LA+ YL ++T+  +E+ G KGKNQ     +  +    YA
Sbjct: 461 FDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYA 519

Query: 504 AEDADVTLQLHQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQNILAAHSKE 563
            EDADVTL+L   L   + E+++ + +F DIEMPLVPVL +IER GVL+D   L   S  
Sbjct: 520 CEDADVTLKLKNVLEKELKENDA-ERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVH 578

Query: 564 LAIRLNELENKAHELAEEPFNLSSTKQLQAILYEKQKL-PILKKTPGGAPSTNEEVLAEL 622
              ++  +E + +ELA E FN++S KQ+  +L++K ++    KKT  G   T+EEVL  L
Sbjct: 579 FTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESL 638

Query: 623 ALNYPLPKVILEYRGLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGRLSSSDPNLQ 682
              +P+ + ILE+RGL KL  TY D LP +INP++GRVHTS++Q VT+TGRLSSS+PNLQ
Sbjct: 639 RHKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQ 698

Query: 683 NIPVRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFAEGKDIHRAT 742
           NIP+R++ G+ IR+AFI  +  +  +ADYSQIELRIMAHLS+D+ ++ AF    DIH AT
Sbjct: 699 NIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAAT 758

Query: 743 AAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQRYMDLYFERYPG 802
           AA+++   L+ V  + RR AK  NFG+IYG+S FGL+ ++N+ RKE++  +D YFE YP 
Sbjct: 759 AAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPS 818

Query: 803 VLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAMRRKGAERAAINAPMQGTAADIIK 862
           V  YME++   A E+GYVET+  R+ +LPDI S NA+ R  AER AINAP+QG+AADIIK
Sbjct: 819 VKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIK 878

Query: 863 RAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNLMEASMTLAVPLKV 922
            AM  +     Q +  +A++I+QVHDEL F V  ++ E   E +   ME +  + VPLK 
Sbjct: 879 VAMARIYQRF-QTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPLKA 937

Query: 923 DVGTGENWDQAH 934
           D G G+NW +AH
Sbjct: 938 DCGWGKNWLEAH 949