Pairwise Alignments

Query, 304 a.a., branched-chain amino acid ABC transporter permease from Rahnella sp. WP5

Subject, 307 a.a., Branched-chain amino acid ABC-type transport system, permease components from Pseudomonas stutzeri RCH2

 Score =  333 bits (854), Expect = 3e-96
 Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 5/303 (1%)

Query: 5   FLQQLFNGITLGAVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLCAIALALLSFFGLH 64
           +LQQL NG+T+G+ Y LIAIGYTMVYGIIGMINFAHGEVYMI +Y+  IA+  LS  GL 
Sbjct: 7   YLQQLINGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVTFIAIVGLSMMGLD 66

Query: 65  SFPLLILGTLVFTIVVTGVYGWAIERIAYKPLRNSTRLAPLISAIGMSLILQNYAQISQG 124
           + P+L++G  V  ++VT  YG++IER+AY+PLR S RL PLISAIGMS+ LQN   ++Q 
Sbjct: 67  ALPILMIGAFVAAMIVTSAYGYSIERVAYRPLRGSNRLIPLISAIGMSIFLQNVVLLAQD 126

Query: 125 PRQQGIPTMLDGAFRFHIGESF---VQMTYTKIFILVASLAGMLVLSWIISNTKLGRMCR 181
            + + IP ++ G     IGES    V ++Y +I I V +   M  L+  IS ++LGR CR
Sbjct: 127 SKDKAIPNLMPG--NLVIGESAMNGVVISYMQILIFVVTFVAMYGLTLFISRSRLGRACR 184

Query: 182 AVQQDRKMASILGINTDRIISLVFMIGAAMAGLAGVLVTMNYGTFDFYAGFIIGIKAFTA 241
           A  +D KMA++LGINT+ II+L F+IGAA+A +A VL++M YG  + + GF+ GIKAFTA
Sbjct: 185 ACAEDLKMANLLGINTNSIIALTFVIGAALAAVAAVLISMQYGVINPHIGFLAGIKAFTA 244

Query: 242 AVLGGIGSLPGAMLGGLILGIAEAQFSGMVNSDYKDVFSFGLLVVILIFRPQGLLGRPVV 301
           AVLGGIGS+PGAMLGGL+LG+AEA  + +    YKDV +F LL+++L+FRP G+LGRP V
Sbjct: 245 AVLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFSLLILVLLFRPTGILGRPEV 304

Query: 302 TKV 304
            KV
Sbjct: 305 EKV 307