Pairwise Alignments

Query, 304 a.a., branched-chain amino acid ABC transporter permease from Rahnella sp. WP5

Subject, 307 a.a., high-affinity branched-chain amino acid ABC transporter, permease protein from Marinobacter adhaerens HP15

 Score =  345 bits (884), Expect = e-99
 Identities = 170/302 (56%), Positives = 226/302 (74%), Gaps = 1/302 (0%)

Query: 4   FFLQQLFNGITLGAVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLCAIALALLSFFGL 63
           +F QQL NG+T+G+ Y LIAIGYTMVYGIIGMINFAHGE+YMI AY   IA+  L+  G+
Sbjct: 6   YFSQQLINGLTIGSTYALIAIGYTMVYGIIGMINFAHGEIYMIGAYTALIAITGLAALGI 65

Query: 64  HSFPLLILGTLVFTIVVTGVYGWAIERIAYKPLRNSTRLAPLISAIGMSLILQNYAQISQ 123
              PL+++  L+  ++V+   GWA+ER+AY+P+R   RL PLISAIGMS+ LQNY  ++Q
Sbjct: 66  AWLPLILIVALLCAMIVSSSMGWAVERVAYRPVRGRHRLIPLISAIGMSIFLQNYVHLAQ 125

Query: 124 GPRQQGIPTMLDGAFRFHIGESF-VQMTYTKIFILVASLAGMLVLSWIISNTKLGRMCRA 182
           G R  G P ++DG F F  G+ F + ++Y +I I + +L  M  LS  IS ++ GR CRA
Sbjct: 126 GSRNIGFPALIDGGFNFGSGDGFQMSLSYMQITIFITTLICMTALSLFISRSRTGRACRA 185

Query: 183 VQQDRKMASILGINTDRIISLVFMIGAAMAGLAGVLVTMNYGTFDFYAGFIIGIKAFTAA 242
           V QD  MA++LGI+T+RIIS  F+IGAA+A +AG+L+ M YG+ D   GFI G+KAFTAA
Sbjct: 186 VSQDLGMANLLGIDTNRIISATFVIGAALAAVAGLLLGMYYGSVDPLFGFIAGLKAFTAA 245

Query: 243 VLGGIGSLPGAMLGGLILGIAEAQFSGMVNSDYKDVFSFGLLVVILIFRPQGLLGRPVVT 302
           VLGGIGS+PGAMLGGLILG+AE+  SG ++ +YKDV SF LL++IL+F+P GLLG+P V 
Sbjct: 246 VLGGIGSIPGAMLGGLILGVAESMTSGYLSGEYKDVISFSLLILILLFKPTGLLGKPEVE 305

Query: 303 KV 304
           K+
Sbjct: 306 KI 307