Pairwise Alignments

Query, 304 a.a., branched-chain amino acid ABC transporter permease from Rahnella sp. WP5

Subject, 301 a.a., branched-chain amino acid ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  248 bits (634), Expect = 9e-71
 Identities = 132/302 (43%), Positives = 197/302 (65%), Gaps = 6/302 (1%)

Query: 5   FLQQLFNGITLGAVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLCAIALALLSFFGLH 64
           FLQQL NG+ +G +Y LIA+GYTMVYG++ +INFAHG+++ I AYL     A L   G  
Sbjct: 4   FLQQLTNGLAVGGIYALIALGYTMVYGVLKLINFAHGDLFTIGAYLGFTVFAALGLSGHV 63

Query: 65  SFPLLILGTLVFTIVVTGVYGWAIERIAYKPLRNSTRLAPLISAIGMSLILQNYAQISQG 124
           S  + +L      + +  + G+ +ER+AY+PLR+S+RL+ ++SA+G S+  QN   +  G
Sbjct: 64  SGAVAVLLVTTMVMGLVALIGYLLERVAYRPLRSSSRLSAVVSALGASIFFQNAVMLIYG 123

Query: 125 PRQQGIPTMLDGAFRFHIGESFVQMTYTKIFILV--ASLAGMLVLSWIISNTKLGRMCRA 182
            + Q  P  +    R  +  SF  M    + I++  AS+A ML+L + I  T+ G   RA
Sbjct: 124 AKFQVYPNDI----RPTMAVSFFGMDIPLVRIMMFGASVALMLLLHFFIHRTRTGTAIRA 179

Query: 183 VQQDRKMASILGINTDRIISLVFMIGAAMAGLAGVLVTMNYGTFDFYAGFIIGIKAFTAA 242
           V  D+  A ++GI+ +R+I+LVFMIG A+ G AGV+V + YG  DF  G++ G+KAFTAA
Sbjct: 180 VAIDQGAAKLMGIDVNRVIALVFMIGPALGGAAGVMVGLYYGQIDFTMGWVYGLKAFTAA 239

Query: 243 VLGGIGSLPGAMLGGLILGIAEAQFSGMVNSDYKDVFSFGLLVVILIFRPQGLLGRPVVT 302
           +LGGIG++PGAM+GGL+LG+ EA  +  ++  +KD  +F +L++ILI RP GLLG  V  
Sbjct: 240 ILGGIGNIPGAMVGGLLLGVIEALGAAYISIAWKDAIAFLVLILILIIRPTGLLGERVAD 299

Query: 303 KV 304
           K+
Sbjct: 300 KI 301