Pairwise Alignments

Query, 610 a.a., ATP-dependent DNA helicase RecQ from Rahnella sp. WP5

Subject, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  703 bits (1814), Expect = 0.0
 Identities = 344/605 (56%), Positives = 442/605 (73%), Gaps = 1/605 (0%)

Query: 1   MSTAAVINKEELAHQVLRDTFGYQQFRPGQQTIINTALSGRDCLVVMPTGGGKSLCYQIP 60
           M T  +   ++   + L   FGY+ FR GQ+ +I     G DCLV+MPTGGGKSLCYQ+P
Sbjct: 1   METQLLNTHDDPLSERLAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLP 60

Query: 61  ALVMDGLTLVVSPLISLMKDQVDQLMAAGVEAGCLNSTQTREQQLEVMAGCRAGRIKMLY 120
           AL+M G+T+VVSPLISLMKDQVD L+  GV A  LNS+Q RE  LEV+     G +K+LY
Sbjct: 61  ALMMHGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLY 120

Query: 121 IAPERLMMGDFLEQLQQWNPAMLAVDEAHCISQWGHDFRPEYRALGQLKLRYPQLPVIAL 180
           ++PERL+  DF+E++Q    +M A+DEAHCISQWGHDFRPEY ALGQLK  +P +P++AL
Sbjct: 121 VSPERLLTADFIERMQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMAL 180

Query: 181 TATADEATRNDIVRLLELNDPLIQVSSFDRPNIRYTLVEKFKPLDQLIRFVQDQRGKSGI 240
           TATAD+ATR +I   L +N P   +SSFDRPNIRYT+ EK    +QL +F+  Q G SGI
Sbjct: 181 TATADQATRQNICERLGIN-PFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGI 239

Query: 241 IYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDTRARVQEGFQRDDLQIVVATVAFGMGI 300
           IYC+SR +V++ A RL  +G    AYHAG+  + R  VQ+ F +D + IVVATVAFGMGI
Sbjct: 240 IYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGI 299

Query: 301 NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQ 360
           NK NVRFVVH+DIP++IE+YYQETGRAGRDGL AEA +L+DPAD+  +R  +E+   G Q
Sbjct: 300 NKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQ 359

Query: 361 QDVERHKLNAMNAFAEAQTCRRLVLLNYFGEGKQNACGNCDVCLDPPKRYDGLLDAQKAL 420
           Q VE HKLN M AFAEAQTCRR VLL+YF E     CGNCD+CLDPPKRY+G  DAQK L
Sbjct: 360 QQVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVL 419

Query: 421 SVVARVGQRFGLGYVVEVLRGSNNQRIREYGHDKLTVYGIGKEHSNEHWTSVVRQLIHLG 480
           S + R+GQRFG+ +++EVLRGS    I + GHDKL+ +GIGK+ S+E+W SV+RQLIHLG
Sbjct: 420 SCIYRLGQRFGINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLG 479

Query: 481 LITQNIAMHSALQLTESARPVLRGEIPLQLAVPRIQTLKIKSSASQKTYGGNYDRKLFAK 540
           L +Q+I   S++ L  SARP+L+GE+ L LA PRIQ   IK   +Q     NYDRKLFA+
Sbjct: 480 LASQDITRGSSITLNPSARPILKGEVALMLAEPRIQLTSIKRKTTQSRVPLNYDRKLFAR 539

Query: 541 LRKLRKSLADDNNVPPYVVFNDTTLLEMAEHLPVSASDLLDITGVGQRKLEKFGRPFMAM 600
           L+ LR+ +A++ +VPPY+VFND TL EMA  +P S  ++L + GVG+RKL +FG  F+  
Sbjct: 540 LKTLRREIAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLDE 599

Query: 601 IRDHI 605
           I  ++
Sbjct: 600 IAAYL 604