Pairwise Alignments

Query, 720 a.a., DNA helicase II from Rahnella sp. WP5

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  889 bits (2297), Expect = 0.0
 Identities = 449/726 (61%), Positives = 569/726 (78%), Gaps = 7/726 (0%)

Query: 2   DVSDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVT 61
           D+S LL+SLN+ QR+AVAAP    LVLAGAGSGKTRVLVHRIAWL  VE+ S +SI++VT
Sbjct: 4   DLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSILSVT 63

Query: 62  FTNKAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIR 121
           FTNKAAAEMR RI+QL+  +  GMW+GTFHGLAHRLLRAH  +A L Q+FQILDSDDQ R
Sbjct: 64  FTNKAAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDDQQR 123

Query: 122 LIKRLIKALNIDDKQWPPRQAMWYINGKKDEGLRPQHVETYNNPVEATWLRIYQAYQEAC 181
           L+KR+I+ L +D+++WP RQA W+IN +KDEGLRP++++   +   AT L+IY+AY+EAC
Sbjct: 124 LVKRVIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQPGGDLFLATQLKIYEAYEEAC 183

Query: 182 DRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDNN 241
            RAG++DF+ELLLRA +LW + P +L+HY+ RF +++VDEFQDTN++QYAW+RLLA    
Sbjct: 184 ARAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAKGGE 243

Query: 242 NVMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAQTIRLEQNYRSTSTILKAANSLIENNN 301
           ++M+VGDDDQSIYGWRGA++EN+ +F +DFP+A+TIRLEQNYRST+ ILKAAN+LI NN 
Sbjct: 244 SLMVVGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIANNQ 303

Query: 302 GRMGKNLWTEDGEGEPISLYCAFNELDESRFVVNRIKTWQDNGGALKDCAILYRSNAQSR 361
           GR+GK LWT   EGEPISLY AFNE DE+R+VV  I+    +G +  + AILYRSNAQSR
Sbjct: 304 GRLGKELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNAQSR 363

Query: 362 VLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGDR 421
           VLEEALL+  +PYRIYGGQRFF+R EIK+A+AYLRL+  R++DAA ERV+N P RGIG++
Sbjct: 364 VLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEK 423

Query: 422 TLDVVRQTARDRQMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHETSDMPLHVQT 481
           T++ +RQ AR++ ++MW A    +  K ++GRAAS+L  F ELVD LA +   M LH   
Sbjct: 424 TVECLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEGMQLHNMA 483

Query: 482 DRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQF-SYQDEDEDLM-PLQAFLSHAA 539
             VI+ SGL   +  EKGEK QAR+ENLEELV+A R F SY +ED+D+  PL AFL HA+
Sbjct: 484 QLVIEQSGLLAYHRDEKGEKAQARVENLEELVSAARAFDSYSEEDDDIQSPLAAFLDHAS 543

Query: 540 LEAGEGQADANQDATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGRLEEERRLA 599
           LEAGE QA  ++D+ QLMTLHSAKGLEFP VF+VGMEEG+FP +MSLEE GRLEEERRLA
Sbjct: 544 LEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEERRLA 603

Query: 600 YVGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEEVRMRASVSR-----PM 654
           YVG+TRAMQ+L +TYAETRRLYG E  ++ SRFV E+P   V+EVR+  +V+R      M
Sbjct: 604 YVGITRAMQQLVITYAETRRLYGSETYNKISRFVREIPPALVQEVRLSNTVTRSFNGKSM 663

Query: 655 SNRSVGTPTSVSDTGFKLGQRVVHPKFGEGTIVNMEGSGEHSRLQVAFPGEGIKWLVAAY 714
           S  S+     V +T F LGQRV H  FGEGTI+N EGSG  +R+QV F  EG KWL+ +Y
Sbjct: 664 SGSSLFDGAGVPETPFSLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSKWLMLSY 723

Query: 715 ARLEAV 720
           A+LEA+
Sbjct: 724 AKLEAL 729