Pairwise Alignments

Query, 720 a.a., DNA helicase II from Rahnella sp. WP5

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  476 bits (1226), Expect = e-138
 Identities = 283/701 (40%), Positives = 396/701 (56%), Gaps = 68/701 (9%)

Query: 5   DLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVTFTN 64
           D +  LN +QREAV A    +LVLAGAG+GKTRVL  RIA +L+  +  P  I+AVTFTN
Sbjct: 42  DYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTN 101

Query: 65  KAAAEMRHRIDQLIGTSQGGM-WIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLI 123
           KAA EM+ RI  L+G +  GM W+GTFH +  +LLR H     L  DF ILD+DD +RLI
Sbjct: 102 KAAREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLI 161

Query: 124 KRLIKALNIDDKQWPPRQAMWYINGKKDEGLRPQHVETYNNPVEATWL--RIYQAYQEAC 181
           K+LI+A  +DDK+WP +Q    I+  K++GL P  +   +    A      +Y AYQ   
Sbjct: 162 KQLIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRL 221

Query: 182 DRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDNN 241
                 DF +LLL    ++   P +L+ Y  +F  ++VDE+QDTN+ QY W+RLLA    
Sbjct: 222 LTLNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQ 281

Query: 242 -----------------------------------------------NVMIVGDDDQSIY 254
                                                          N+  VGDDDQSIY
Sbjct: 282 ASRNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSIY 341

Query: 255 GWRGAQVENIQRFLKDFPNAQTIRLEQNYRSTSTILKAANSLIENNNGRMGKNLWTE--D 312
           GWRGA+V+NI RF KDFP A+ I+LE+NYRST  IL AA  LI +N GR+GK L+TE  +
Sbjct: 342 GWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTN 401

Query: 313 GEGEPISLYCAFNELDESRFVVNRIKTWQDNGGALKDCAILYRSNAQSRVLEEALLQMAM 372
            + E + ++ A++  +E+R +   I+  Q     L D +IL R++ Q R  E+  + + +
Sbjct: 402 PDDEKVHVHAAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLGL 461

Query: 373 PYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARD 432
            YR+ GG RF++R EI+DA+AY RL+    DD AFER+VNTP RG+G+ T+  +   AR 
Sbjct: 462 NYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYARA 521

Query: 433 RQMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHET--SDMPLHVQTDRVIKDSGL 490
           R + M  A   +++   L  +A   L  F  + D    +T     P     +R++ +SG 
Sbjct: 522 RDIPMLAAASDIVETDELKPKARKGL--FDVVADFRRWQTLLETTPHTELAERILDESGY 579

Query: 491 FIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALEAGEGQADAN 550
             M++ +K  +   R+ENL+EL+ +   F           ++ FL H AL   + + + N
Sbjct: 580 TAMWQADKSAEAPGRLENLKELIRSMEAFE---------SMRGFLEHVAL-VMDAEQNEN 629

Query: 551 QDATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGR--LEEERRLAYVGVTRAMQ 608
            DA  +MTLHSAKGLEF  VF+ G EEG+FP Q +L+EGGR  LEEERRLAYVG+TRA +
Sbjct: 630 MDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAKR 689

Query: 609 KLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEEVRMRAS 649
           +  + +   RR++G   S  PSRF+ ELP   VE      S
Sbjct: 690 RCHIWFVSNRRIHGLWQSTLPSRFLDELPIAHVEVAEQEVS 730



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 651 SRPMSNRSVGTPTSVSDTGFKLGQRVVHPKFGEGTIVNMEGSGEHSRLQVAFPGEGIK 708
           +R +    V   TS   + F +G RV H KFG G I  +EG    ++L + F   G K
Sbjct: 794 TRTIEGELVAKSTSAEPSRFNVGDRVFHIKFGNGNIAAIEG----NKLTIDFDRAGQK 847