Pairwise Alignments

Query, 720 a.a., DNA helicase II from Rahnella sp. WP5

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  502 bits (1293), Expect = e-146
 Identities = 294/756 (38%), Positives = 427/756 (56%), Gaps = 63/756 (8%)

Query: 7   LDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVTFTNKA 66
           L  LN +QR AV      +LVL+GAG+GKTRVL  R+A +LA     P+ ++AVTFTN+A
Sbjct: 25  LAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRA 84

Query: 67  AAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLIKRL 126
           A EMR R   +IG     +W+GTFH L  R+LR H     L   F ILD+DDQ+RL+K++
Sbjct: 85  AREMRERAGAMIGPMAEQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQI 144

Query: 127 IKALNIDDKQWPPRQAMWYINGKKDEGLRPQHVETYNNPVEATWLR---IYQAYQEACDR 183
           ++A  ID K+W P+  M  I   KD+GL P+ V   +   E    R   +Y+ YQ+    
Sbjct: 145 LEAEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAV 204

Query: 184 AGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDNNNV 243
               DF +LLL    ++   P +L  Y + F  ++VDE+QDTN  QY W+RLLA  + N+
Sbjct: 205 VNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNI 264

Query: 244 MIVGDDDQSIYGWRGAQVENIQRFLKDFPNAQTIRLEQNYRSTSTILKAANSLIENNNGR 303
             VGDDDQSIY WRGA+V NI RF  DFP A  +RLE+NYRST TIL AA+ LI +N GR
Sbjct: 265 CCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGR 324

Query: 304 MGKNLWTEDGE--GEPISLYCAFNELDESRFVVNRIKTWQDNGGALKDCAILYRSNAQSR 361
           +GK+L   +G+  G+ + +   ++  +E+R VV+ I+T Q  G  L   A+L R+  Q+R
Sbjct: 325 LGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDIETRQRAGDRLNGMAVLVRAGFQTR 384

Query: 362 VLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGDR 421
             EE L+   +PYR+ GG RF++RQEI+DA+AYLRL++  +D  AFER++N P RG+GD 
Sbjct: 385 AFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDA 444

Query: 422 TLDVVRQTARDRQMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHETSDMPLHVQT 481
           +L  + + +R   +++ +A R  ++   L  +A  +L+ F + +         M      
Sbjct: 445 SLQTLMRASRMASISLMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAPDELC 504

Query: 482 DRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALE 541
             V+ +SG   M+ ++K    Q R+ENL+ELV+A ++F           L AFL H +L 
Sbjct: 505 GTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALKEFE---------SLGAFLEHVSL- 554

Query: 542 AGEGQADANQDATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGG--RLEEERRLA 599
             + +A A +DA  LMTLH+AKGLEF  VF+ G EE +FP + +L+E G   LEEERRLA
Sbjct: 555 VMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEALEEERRLA 614

Query: 600 YVGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEE---------------- 643
           YVG+TRA ++  +++   RR+Y +  +  PSRF+ ELP + VE                 
Sbjct: 615 YVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVERDSASGVYGSGAQGYAD 674

Query: 644 -----------------------VRMRASVSRPMSNRSVGTPTSVSDTGFKLGQRVVHPK 680
                                   R+ A+   P   R     +       + G RV H K
Sbjct: 675 APGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTRD---RSGDDQPSLRPGDRVFHDK 731

Query: 681 FGEGTIVNMEGSGEHSRLQVAFPGEGIKWLVAAYAR 716
           FG GT++    + +  RL++ F   GIK ++  + R
Sbjct: 732 FGGGTVL----AADQGRLEIDFDKAGIKKVMGGFVR 763