Pairwise Alignments

Query, 720 a.a., DNA helicase II from Rahnella sp. WP5

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score =  453 bits (1166), Expect = e-131
 Identities = 288/740 (38%), Positives = 407/740 (55%), Gaps = 40/740 (5%)

Query: 6   LLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVTFTNK 65
           LLD LN +QR+AV    S LL++AGAGSGKT VL  RIA+L+A        I+A+TFTNK
Sbjct: 19  LLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNK 78

Query: 66  AAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHH-LDANLPQDFQILDSDDQIRLIK 124
           AAAEMR R+  L+G     MW+ TFH    R+LR    L   L  +F I D+DD  RL++
Sbjct: 79  AAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQ 138

Query: 125 RLIKALNIDDKQWPPRQAMWYINGKKDEGLRPQH----VETYNNPVEATWLRIYQAYQEA 180
            + + L +D K++ PR     I+  K+E + P      +   ++ +      +Y  YQ  
Sbjct: 139 MVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRR 198

Query: 181 CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDN 240
              A  +DF +L+     +    P I Q+YR RF +++VDE+QDTN  QY  +R L G +
Sbjct: 199 LRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRD 258

Query: 241 NN-------VMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAQTIRLEQNYRSTSTILKAA 293
           +N       + +VGD DQSIY +RGA + NI+ F +D+P+ +TI LEQNYRST  IL AA
Sbjct: 259 SNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAA 318

Query: 294 NSLIENNNGRMGKNLWTEDGEGEPISLYCAFNELDESRFVVNRIKTWQDNGG-ALKDCAI 352
           NS+I  N GR  K LWT+ G GE I  Y A NE DE+RFV   I    +       D A+
Sbjct: 319 NSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAV 378

Query: 353 LYRSNAQSRVLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVN 412
            YR+N  SR LEE L++  +PY++ GG RF++R+EI+D +AYLR++ N  D  +  R++N
Sbjct: 379 FYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILN 438

Query: 413 TPTRGIGDRTLDVVRQTARDRQMTMWQATRALLQEKV--LAGRAASSLQRFTELVDALAH 470
           TP RGIGDR    V   A +  +    A  A  Q KV  L  RA  ++  F E+ D L  
Sbjct: 439 TPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRG 498

Query: 471 ETSDMPLHVQTDRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSYQDE------ 524
              D  L    + V++ +G     E     +  AR++NL ELV+   +FS   E      
Sbjct: 499 RLDD-DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFSTDRENAAALG 557

Query: 525 --DEDLMP---LQAFLSHAALEAGEGQ-ADANQDATQLMTLHSAKGLEFPQVFIVGMEEG 578
             DED+     L  FL   +L A   +  +       LMTLH+AKGLEFP VF+ G E+G
Sbjct: 558 PDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDG 617

Query: 579 MFPSQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPE 638
           MFP   +L+    L EERRLAYVG+TRA Q+L ++ A  R  +G+ + +  SRF+ E+P+
Sbjct: 618 MFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQ 677

Query: 639 DCVEEVRM--RASVSRPMS--NRSVGTPTSVSDTG--------FKLGQRVVHPKFGEGTI 686
           + ++  R   + S S P+S   R      S + +G         ++G RV H K+G G +
Sbjct: 678 ELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRV 737

Query: 687 VNMEGSGEHSRLQVAFPGEG 706
             + G GE +   + F   G
Sbjct: 738 EEVSGVGESAMSLIDFGSSG 757