Pairwise Alignments

Query, 731 a.a., primosomal protein N' from Rahnella sp. WP5

Subject, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

 Score =  825 bits (2130), Expect = 0.0
 Identities = 414/729 (56%), Positives = 529/729 (72%), Gaps = 2/729 (0%)

Query: 3   VAHVALPVPLARTFDYLLPPDMQVSKGCRVSVPFGKRDAIGIVTQVSDFSEFGLEKLKPV 62
           +A V LPVPL ++FDYL+P  +    G RV VPFG++  +GIV  ++  S+F +E+LK V
Sbjct: 5   IARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSV 64

Query: 63  REVLDSSSLFTPDLWRILFWAADYYHYPIGEVLFHALPVLLRQGKAAELTPLWQWFATEE 122
           + VLD + ++   L  +L W + +YHYP+GE   +ALP  LR+GKAAELT   +W  T  
Sbjct: 65  QAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWRLTAL 124

Query: 123 GRATPLDSLKRAPKQQQAMAALMQKPLYRHQ-VADLDLTDTALQALRAKGLTDLRSIAPA 181
           G+   +  +KR   +Q  +  L+Q     HQ + D +++ T L+AL  KG  +     P 
Sbjct: 125 GQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECEERKPV 184

Query: 182 THDWRQDFSVIGERLRLNTEQATAVGAIRSEDQQFSAWLLAGVTGSGKTEVYLSVLENIL 241
              W Q+     ++ RLN EQA A+ A+ S+ Q F  +LL GVTGSGKTEVYL+++  +L
Sbjct: 185 ARPWPQELEAKVDKPRLNQEQAIAIAAVNSQ-QGFGCFLLEGVTGSGKTEVYLNLITPVL 243

Query: 242 AQGRQALVMVPEIGLTPQTIARFRERFSAPVDVLHSGLNDSERLAVWLRARNGEAGIVIG 301
           A+G QALV+VPEIGLTPQTI RFR+RF+ PV+V+HS LND+ERL  WL AR+  AGIVIG
Sbjct: 244 ARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIG 303

Query: 302 TRSSLFTPFARLGVIIIDEEHDSSYKQQEGWRYHARDLAVYRAHAENIPIIMGSATPALE 361
           TRS+L TPFA+LG+II+DEEHDSSYKQQ+  RYHARD+AV RAH ENIPI++GSATPALE
Sbjct: 304 TRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALE 363

Query: 362 TLHNVELGKYRQLKLTKRAGNAKLARQNLLDLKGLQLKVGLSQPLIQKMQEHLKADNQVM 421
           TLHN   GKY  L+LT+RAGNA   R + LD+KGL L+ GLS PLI +M+ HL A NQVM
Sbjct: 364 TLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAGNQVM 423

Query: 422 LFLNRRGYAPALLCHECGWIAECQRCDHYYTLHQNQRQLRCHHCDSQRAVPHQCPHCGST 481
           LFLNRRG++PAL+CHECGWIAECQRCD YYT HQ+  ++RCHHC SQR V HQC  CGST
Sbjct: 424 LFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKGCGST 483

Query: 482 QLVSVGVGTEQLENELAPLFPDTPITRIDRDTTSRKGSLEQHLNEVHRGGARILIGTQML 541
           QLV+VGVGTEQLE +L  LFP+    RIDRD+T RKGSLE  L  + +G  +ILIGTQML
Sbjct: 484 QLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQML 543

Query: 542 AKGHHFPDVTLVSLLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHHPE 601
           AKGHHFPDVTLV+LLDVDG+L+S+DFR++ER AQL+ QV+GRAGRA K GEVVLQTHHPE
Sbjct: 544 AKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPE 603

Query: 602 HPLLQVLLQQGYDEFARQTLAERKSVFLPPYTSHIMIRSEDHDNQQSALFLQQLRNLLES 661
           H LLQ LL + Y  FA   L ERK   LPPY+   + R+E +   Q   FL+Q+R  L  
Sbjct: 604 HSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRETLRC 663

Query: 662 SPLKDDSLWILGPVPALQAKRSGRFRWQLLLQHPSRRVLQHLIKSSQPLISSLPQAKKVK 721
           +P  D    +LGP PA  AKR+G+FRWQLLLQ P+R ++Q +++S++P +  LP A KV+
Sbjct: 664 NPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLASKVR 723

Query: 722 WTLDVDPID 730
           W++D+DP D
Sbjct: 724 WSIDIDPQD 732