Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  240 bits (612), Expect = 4e-68
 Identities = 144/309 (46%), Positives = 189/309 (61%), Gaps = 15/309 (4%)

Query: 21  VNEADQSLTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFL 80
           + +   +  E FL+M+  ER  A NTL SY +DL+    +L    T L   SA+DL+ +L
Sbjct: 1   MTDMSAAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYL 60

Query: 81  SERIEGGYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVD 140
           S     G+KA+S AR LSA+R+ ++++  E +R DDPT +L +PK  + LPK LS   V 
Sbjct: 61  SHLAGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVT 120

Query: 141 ALLA-------SPSVDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGK 193
            L+        S S DV  +LR  A++ELLYATG+RVSELV L  S L+     + + GK
Sbjct: 121 RLIGQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGK 180

Query: 194 GNKERLVPMGEEAVYWIENYFEHGRPWLLNGQSLDI--VFPSN-RAQQMTRQTFWHRIKH 250
           GNKERLVP+ + A+  +  Y E      L  +S D   +FPSN ++  + RQ F   +K 
Sbjct: 181 GNKERLVPLSQAAIRAMRAYGE-----ALQEESADSPWLFPSNGKSGHLPRQVFARDLKS 235

Query: 251 YAILAGIDAERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 310
            A  AGI    +SPHVLRHAFA+HLL +GADLR VQ LLGHSD+STTQIYTHV  ERL  
Sbjct: 236 LAARAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHD 295

Query: 311 LHQQHHPRA 319
           L Q HHP A
Sbjct: 296 LVQNHHPLA 304