Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  212 bits (540), Expect = 9e-60
 Identities = 132/298 (44%), Positives = 177/298 (59%), Gaps = 9/298 (3%)

Query: 30  EQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERIEGGYK 89
           E FL+M+  ER  A  T+ +Y +DL+    +L     D L VS   L+ +L+     G  
Sbjct: 23  EAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLA 82

Query: 90  ATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALL-ASPSV 148
             S AR LS +R+   ++  E  R DDPT  L SP+L + LP+ LSEA+VDALL A+ + 
Sbjct: 83  PRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAG 142

Query: 149 DVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAVY 208
           +    LR + +LELLY+TGLRVSELV L LS  +     + V GKG+KERLVP+G  A  
Sbjct: 143 EGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARA 202

Query: 209 WIENYFEHGRPWLLNGQSLD------IVFPSNRAQ-QMTRQTFWHRIKHYAILAGIDAER 261
            + ++    RP  L             +FPS+ A+  +TR  F   +   A+ AGID  R
Sbjct: 203 ALRDWLI-ARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGIDPAR 261

Query: 262 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 319
           +SPHVLRH FA+H+L HGADLR VQ LLGH+D++TTQIYTHV  +RL  L +  HP A
Sbjct: 262 VSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLA 319