Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  337 bits (863), Expect = 3e-97
 Identities = 174/291 (59%), Positives = 218/291 (74%), Gaps = 1/291 (0%)

Query: 28  LTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERIEGG 87
           L E FLD LW  + L+++TL +YR DL     +L+   + LL  S  +++ +L+ R+E G
Sbjct: 13  LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHG 72

Query: 88  YKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLASPS 147
           +  TSSARLLS++RR ++Y+  + + + DP A++  PKL ++LP  LSEA VD LL+ P+
Sbjct: 73  FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132

Query: 148 VDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAV 207
            + P+E RD+AMLELLYA+GLRVSELVGLTL  +SLRQGVVR++GKG+KERLVP GE+A 
Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192

Query: 208 YWIENYFEHGRPWLLNGQSLDIVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSPHVL 267
             IE+Y +  R  LL G++ D+VFPS R   MTRQTFWHRIK YA  AGI A  LSPH L
Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGI-AVHLSPHTL 251

Query: 268 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPR 318
           RHAFATHLLNHGADLRVVQ+LLGHSDLSTTQIYTHVA  RL  LHQ HHPR
Sbjct: 252 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302