Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 311 a.a., Probable integrase/recombinase from Mycobacterium tuberculosis H37Rv

 Score =  198 bits (504), Expect = 1e-55
 Identities = 130/302 (43%), Positives = 176/302 (58%), Gaps = 16/302 (5%)

Query: 32  FLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNN-TDLLHVSAEDLQLFLSERIEG---- 86
           +LD L IER +A NTLSSYR+DL+     L     TDL  V   D+  FL     G    
Sbjct: 11  YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70

Query: 87  ---GYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALL 143
                 A S+AR L A+R L ++   E + + D    +  P   +RLPK L+  +V +LL
Sbjct: 71  GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130

Query: 144 AS-----PSVDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKER 198
                  PS D PL LR++A+LELLY+TG R+SE VGL L D+      V + GKG K+R
Sbjct: 131 EGAGGDKPS-DGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQR 189

Query: 199 LVPMGEEAVYWIENYFEHGRPWLL-NGQSLDIVFPSNRAQQMTRQTFWHRIKHYAILAGI 257
           LVP+G  AV+ ++ Y   GRP L   G+    +F + R  +++RQ+ W  ++  A  AGI
Sbjct: 190 LVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGI 249

Query: 258 DAERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 317
            A  +SPH+LRH+FATHLL  GAD+RVVQ LLGH+ ++TTQIYT V    L+ +    HP
Sbjct: 250 TA-GVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHP 308

Query: 318 RA 319
           RA
Sbjct: 309 RA 310