Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  346 bits (887), Expect = e-100
 Identities = 180/291 (61%), Positives = 215/291 (73%), Gaps = 1/291 (0%)

Query: 28  LTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERIEGG 87
           L + FLD LW  + L++NTLS+YR DL+    +L      L  V   D++ +L+ R+E  
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVEQQ 69

Query: 88  YKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLASPS 147
           +  TSSARLLS++RR + Y+ +      DP A + SPKL + LP  LSE+QVD LLA P+
Sbjct: 70  FARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPN 129

Query: 148 VDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAV 207
           VD P+E RDKAMLELLYATGLRVSELVGLT+  +SLRQG+VR+IGKG KERLVPMGE A+
Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEMAI 189

Query: 208 YWIENYFEHGRPWLLNGQSLDIVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSPHVL 267
             +E+Y    R  LL     D+VFPS R+Q MTRQTFWHRIK YA  AGI+ E LSPH L
Sbjct: 190 TEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE-LSPHTL 248

Query: 268 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPR 318
           RHAFATHLLNHGADLRVVQ+LLGHSDLSTTQIYTHVA  RL+ LHQQHHPR
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299