Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas stutzeri RCH2

 Score =  644 bits (1660), Expect = 0.0
 Identities = 325/557 (58%), Positives = 417/557 (74%), Gaps = 2/557 (0%)

Query: 21  ELSPLLRRLYLARGVTQSHELERGVRGMLPYQQLDGIDTAVALLQKALAERLRIIIVGDF 80
           EL PLL+RLY ARGVT + EL++G+  ++PY+QL GID AV LL +AL +R RI+ VGDF
Sbjct: 17  ELPPLLQRLYAARGVTCAEELDKGLARLIPYKQLKGIDAAVELLVEALEKRQRILFVGDF 76

Query: 81  DADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASRGAELILTVDNGI 140
           DADGAT++ + +L LR +G  ++DYLVPNRFE GYGL+PE+V  A  R  +L++TVDNGI
Sbjct: 77  DADGATASTVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPDLLVTVDNGI 136

Query: 141 SSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFYLML 200
           SS  GV  A   G++VL+TDHHLPG  LP A+AI+NPN   C FPSK +AGVGV FY++L
Sbjct: 137 SSVDGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPECAFPSKCIAGVGVIFYVLL 196

Query: 201 ALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRAGKC 260
           ALR+ LRE  WF + G A PNLAE LDLVALG+VADVVPLD NNRI+V+QGL RIRAG+ 
Sbjct: 197 ALRARLRELDWFVRQGWAEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIRAGRA 256

Query: 261 RAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIGQARALAS 320
           RAG+RA+LEVAGR+ R + ++DLGF LGPRLNAAGRLDDMS+G+  LL ED   AR +A 
Sbjct: 257 RAGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALARDMAV 316

Query: 321 DLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQGVVGILASRLKER 380
            LD LN+ R+ IEQGMQ EALA    L    + LPFGL ++  +WHQGV+GILASRLKER
Sbjct: 317 QLDELNKDRKSIEQGMQREALAQLKDL--PLEDLPFGLCLFEADWHQGVIGILASRLKER 374

Query: 381 FNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLSLEES 440
           ++RP IAFA AG+G+LKGS RS+ G H+RDAL+ +   +PGL+ KFGGHAMAAGLSL ++
Sbjct: 375 YHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAAKHPGLISKFGGHAMAAGLSLPQA 434

Query: 441 KFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEMLRDGGPWGQAFPEPTF 500
            F  F   F A V   L    L G + +DG+LS  E  ++ A  LR+ GPWGQ FPEP F
Sbjct: 435 NFGAFAAAFDAEVRRQLCEEDLTGRLLTDGQLSVEEFHLELARALRNAGPWGQHFPEPMF 494

Query: 501 DGRFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPTFWPDSSIREVQLAYRLDINE 560
            G F+++QQ+++ ERHLKL+++   G   LDGIAFN+D   WP+ ++R  +LAY+LD+NE
Sbjct: 495 HGVFQLVQQRIVGERHLKLVLKSECGSLTLDGIAFNVDREIWPNPTVRWAELAYKLDVNE 554

Query: 561 FRGNRSVQLIIEHLWPK 577
           +RG  SVQL++ H+ P+
Sbjct: 555 YRGQESVQLMVAHIAPR 571