Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

 Score =  717 bits (1850), Expect = 0.0
 Identities = 356/577 (61%), Positives = 458/577 (79%), Gaps = 5/577 (0%)

Query: 6   QLRRREAATGVDLPAELSPLLRRLYLARGVTQSHELERGVRGMLPYQQLDGIDTAVALLQ 65
           +++RR       LP  + PLLRRLYL+RGV+   +LE+  + +  ++QL GID AV LL 
Sbjct: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62

Query: 66  KALAERLRIIIVGDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQA 125
            A+AE+ RII+VGDFDADGATS+AL++L+LR +G  N+DYLVPNRFEDGYGLSPEVV+QA
Sbjct: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122

Query: 126 ASRGAELILTVDNGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFP 185
             RGAE+I+TVDNG+SS  GV  A +KG+QV++TDHHLPG+ LP+ +A++NPNL  C FP
Sbjct: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182

Query: 186 SKSLAGVGVAFYLMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNR 245
           SK+LAGVGVAFYLM+AL   +R+ GWF   G+  P L E +DLVALGTVADVVPLD NNR
Sbjct: 183 SKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNR 242

Query: 246 IMVYQGLNRIRAGKCRAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVA 305
           I+V+QGL RIRAG  R GI+AL+EVA R+AR L A+D GFALGPR+NAAGRLDDMS GV 
Sbjct: 243 ILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVE 302

Query: 306 LLLSEDIGQARALASDLDALNQTRREIEQGMQVEALALCDKLESSTD-ALPFGLAMYHPE 364
           LLL  +I  AR +AS+LD LNQTR+EIE+GM+ EA+A C++L+ S D  LP+GL ++  +
Sbjct: 303 LLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRD 362

Query: 365 WHQGVVGILASRLKERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMM 424
           WHQGV+GILASR+KE+++RPVIAFA  G+G LKGS RS+ GLHMRDAL+++DT NPG+++
Sbjct: 363 WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIIL 422

Query: 425 KFGGHAMAAGLSLEESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEM 484
           KFGGHAMAAGL++EE  F+ F   F  LV E LD + L+G++ SDGEL   E ++ TAE+
Sbjct: 423 KFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAEL 482

Query: 485 LRDGGPWGQAFPEPTFDGRFRILQQKLLKERHLKLMIEPVGGG----PLLDGIAFNIDPT 540
           LR GGPWGQAFPEP FDG F++L QKL+ E+HLKLM+EP+  G     ++DGIAFN+D  
Sbjct: 483 LRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLR 542

Query: 541 FWPDSSIREVQLAYRLDINEFRGNRSVQLIIEHLWPK 577
            WPD+S++ V+LAY+LDINEFRGN+S+QL+I+HL  K
Sbjct: 543 RWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK 579