Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 600 a.a., single-stranded-DNA-specific exonuclease from Sinorhizobium meliloti 1021

 Score =  263 bits (671), Expect = 2e-74
 Identities = 196/559 (35%), Positives = 281/559 (50%), Gaps = 25/559 (4%)

Query: 23  SPLLRRLYLARGVTQSHE---LERGVRGMLPYQQL--DGIDTAVALLQKALAERLRIIIV 77
           S L+ R+   RGV        LE  +R ++P      DG   A  L   A+  R +++I 
Sbjct: 46  SELIARVLAGRGVGLDDAAAFLEPTLRALMPDPDTLTDGRKAAERLAD-AIRRREKVVIF 104

Query: 78  GDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASRGAELILTVD 137
           GD+D DGA S+AL    LR       +  +P+R  +GYG +P+ ++Q   RG+ELI+TVD
Sbjct: 105 GDYDVDGAASSALMARFLRHFDI-TAEIYIPDRIFEGYGPNPQAIDQLIDRGSELIVTVD 163

Query: 138 NGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFY 197
            G +SH  + +A E+   V++ DHH  G +LP   A++NPN          L   GV + 
Sbjct: 164 CGSTSHEALAVAAERRTDVVVIDHHQVGSVLPPCHALVNPNREDDLSGQGHLCAAGVVYL 223

Query: 198 LMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRA 257
           +++     LR  G       A  +L   LDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 224 VLVNTLRVLRLRG---DPRAASFDLLSLLDLVALATVCDVVPLKGLNRAYVVKGLLAAR- 279

Query: 258 GKCRAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIGQARA 317
               AG+ ALL  A      +    LGF LGPR+NA GR+ D ++G  LL  +    A A
Sbjct: 280 HMGNAGLAALLRKAA-IGGPVTPYHLGFLLGPRINAGGRIGDAALGSRLLTLDVAAAAEA 338

Query: 318 LASDLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQGVVGILASRL 377
           +AS LD LN+ R+ +E  M  EA A     E  T      +      WH G+VG++A+R+
Sbjct: 339 IASQLDELNRDRQAMEAAMLAEAEAEV-LAEYGTGEGASVIVTARQNWHPGIVGLIAARI 397

Query: 378 KERFNRP--VIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGL 435
           KE+F RP   IAF P G G   GSGRSI G  M   +     ++ GL++K GGHAMAAGL
Sbjct: 398 KEKFRRPAFAIAFDPNGRG--TGSGRSINGFDMGRLVRA--AVDNGLLVKGGGHAMAAGL 453

Query: 436 SLEESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEMLRDGGPWGQAF 495
           ++E  K  + R  F       +        +  DG L+A   T+D  ++L   GP+G   
Sbjct: 454 TVERGKLGQLRQFFEERAETAIRDLVAVQTLKVDGALAAAGATLDLVDLLDQAGPYGSGH 513

Query: 496 PEPTFD-GRFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPT----FWPDSSIREV 550
           P+P F   + R+   + +   H+K+ +E   G   ++GIAF    T    F   +    V
Sbjct: 514 PQPLFAFPQHRLRDSRQVGANHVKVTLEGQDGS-RMEGIAFRAAETPLGDFLLGNRGATV 572

Query: 551 QLAYRLDINEFRGNRSVQL 569
            +A  +  + ++G R VQL
Sbjct: 573 HVAGSVSADLWQGTRKVQL 591