Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 606 a.a., RecJ exonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score =  290 bits (743), Expect = 9e-83
 Identities = 202/543 (37%), Positives = 287/543 (52%), Gaps = 26/543 (4%)

Query: 45  VRGMLPYQ-QLDGIDTAVALLQKALAERLRIIIVGDFDADGATSTALTLLSLRSMGCGNL 103
           +R +LP    L  +D AVA L KA+ ++  I I GD+D DGATSTAL     RS+G   L
Sbjct: 77  LRALLPDPGHLLDMDKAVARLSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLGARVL 136

Query: 104 DYLVPNRFEDGYGLSPEVVEQAASRGAELILTVDNGISSHAGVTLAHEKGIQVLITDHHL 163
            + +P+R  +GYG +   +E  A++GA ++LTVD GIS+   +  A   G+ V++ DHH 
Sbjct: 137 IH-IPDRVLEGYGPNAPALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHHE 195

Query: 164 PGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFYLMLALRSALRESGWFEQNGLAIPNLA 223
               LP A A++NP  +    P   LA VGVAF + +A+   LR+SGWF       P+L 
Sbjct: 196 ARTELPAAVAVVNPKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDLM 255

Query: 224 EHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRAGKCRAGIRALLEVAGREARTLCASDL 283
             LDLVALGTV D+VPL   NR +V QGL ++ A +   GI AL EV+G   R + A  L
Sbjct: 256 ALLDLVALGTVCDMVPLIGVNRALVQQGL-KVIAKRTNPGIAALAEVSGVRDR-VDAFHL 313

Query: 284 GFALGPRLNAAGRLDDMSVGVALLLSEDIGQARALASDLDALNQTRREIEQGMQVEALAL 343
           GF LGPR+NA GR+    +G ALL SED  +    A  LDA N  R+EIE  +  +A+  
Sbjct: 314 GFMLGPRVNAGGRVGQAGMGAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAIEQ 373

Query: 344 CDKLESSTDALPFGLAMYHPEWHQGVVGILASRLKERFNRPVIAFAPAGEGILKGSGRSI 403
            +   ++   L F       +WH GVVGI+ASRLKER+  P  A A  G G+ KGSGRS+
Sbjct: 374 VEAAPANDLPLVFASG---TDWHPGVVGIVASRLKERYGLPACAVALDG-GLAKGSGRSV 429

Query: 404 AGLHMRDALERLDTLNPGLMMKFGGHAMAAGLSLEESKFDEFRDRFAALVGEWLDPSHLE 463
            G+ +   +  +     G++   GGHAMAAG SL   + +EFR      + + +    L 
Sbjct: 430 GGVDLGRVV--IAAREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALV 487

Query: 464 GVVWSDGELSARELTIDTAEMLRDGGPWGQAFPEPTFD-GRFRILQQKLLKERHLKLMIE 522
             +  DG L  R         L   GP+G   PEP F     R+ +  ++   H++  + 
Sbjct: 488 ASLDLDGVLDVRGANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLN 547

Query: 523 PVGGGPLLDGIAFNIDPTFWPDSSI---------REVQLAYRLDINEFRGNRSVQLIIEH 573
              GG  L  +AF        DS I           + +A  L ++ F+G  +V L+++ 
Sbjct: 548 GPSGGS-LKAMAFKA-----ADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVDD 601

Query: 574 LWP 576
           + P
Sbjct: 602 VAP 604