Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella loihica PV-4

 Score =  647 bits (1670), Expect = 0.0
 Identities = 324/569 (56%), Positives = 423/569 (74%), Gaps = 1/569 (0%)

Query: 9   RREAATGVDLPAELSPLLRRLYLARGVTQSHELERGVRGMLPYQQLDGIDTAVALLQKAL 68
           RR       LP+ LSP+L+++Y +RG T   + E  +  +L    L  +D A A++  A+
Sbjct: 7   RRPKVDDSHLPSHLSPILKQVYASRGCTVD-DCELALANLLRPNTLKDVDKAAAIIADAM 65

Query: 69  AERLRIIIVGDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASR 128
           A++  I+I+GDFDADGATST++ LL+LR MG  N+DYL+PNRF+ GYGLSPE+V+ A  +
Sbjct: 66  AKQQSILIIGDFDADGATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVAQQK 125

Query: 129 GAELILTVDNGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKS 188
           GAEL++TVDNGISS  GV  A   G+QV+ITDHHLPG  +P+A+AI+NPN +GC F SK+
Sbjct: 126 GAELLITVDNGISSIEGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFASKA 185

Query: 189 LAGVGVAFYLMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMV 248
           +AGVGVAFYLM ALR+ LR  GW++  G+  PNLA  LD+VALGTVADVV LDTNNRI+V
Sbjct: 186 IAGVGVAFYLMSALRAELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNRILV 245

Query: 249 YQGLNRIRAGKCRAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVALLL 308
             GL R+RAG+CR GI ALLEVA R    + ASD GFA+GPRLNAAGRLD+M++GV  LL
Sbjct: 246 DAGLKRVRAGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVETLL 305

Query: 309 SEDIGQARALASDLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQG 368
            +D+ +AR +AS+LD LN  RRE+E GMQ EAL   + L  +   LP+G+A+Y  +WHQG
Sbjct: 306 CDDMMRARRMASELDGLNAERRELETGMQQEALKSLESLSLNEAELPWGIALYQQDWHQG 365

Query: 369 VVGILASRLKERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGG 428
           V+GILASR+K++++RPVIAFA AGEG +KGS RSI GLHMRD LE ++  +PG+++KFGG
Sbjct: 366 VIGILASRIKDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMIIKFGG 425

Query: 429 HAMAAGLSLEESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEMLRDG 488
           HAMAAGLSL   +F+ F   +   V E L P  L G + SDGELS  +L +  A  LR  
Sbjct: 426 HAMAAGLSLRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALARELRSA 485

Query: 489 GPWGQAFPEPTFDGRFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPTFWPDSSIR 548
           GPWGQ FPEP FDG FRILQQ+++ ERHLKL++E   G  ++D IAFN+D T WPD++I+
Sbjct: 486 GPWGQNFPEPIFDGVFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWPDATIQ 545

Query: 549 EVQLAYRLDINEFRGNRSVQLIIEHLWPK 577
             ++AY+LDINEFRGN S+QL++E + PK
Sbjct: 546 YAEVAYKLDINEFRGNESLQLMVEQIEPK 574