Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  280 bits (716), Expect = 1e-79
 Identities = 204/567 (35%), Positives = 298/567 (52%), Gaps = 34/567 (5%)

Query: 22  LSPLLRRLYLARGVTQSHELE----RGVRGMLPYQQLDGIDTAVALLQKALAERLRIIIV 77
           +S LL RL L RG++   +++      +R + P ++  G+  A  ++   +   +   + 
Sbjct: 26  ISDLLLRLLLRRGLSSVQDMDVYLSPQLRHLAPLEEWPGLAEAAGVITAGITAGMPFAVW 85

Query: 78  GDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASRGAELILTVD 137
           GD+D DG TSTAL    L   G  ++ + +P+R  +GYGL+ E +E+ A+ G  L+LTVD
Sbjct: 86  GDYDVDGVTSTALVHDVLEFHGV-DVRHHLPDRRAEGYGLNVEWIERLAADGVRLLLTVD 144

Query: 138 NGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFY 197
            GIS    ++ A E G+ V+++DHHLP E+LP A AI NP L  C  P  +LAGVGVAF+
Sbjct: 145 CGISDVVPISRARELGMTVVVSDHHLPPEVLPPAHAICNPRLACC--PCPALAGVGVAFF 202

Query: 198 LMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRA 257
           +M A+ +AL E            ++ E LDLVALGT+ADVV L   NRI+V  GL +I  
Sbjct: 203 VMAAVNAALGERSGRRY------DMREVLDLVALGTLADVVDLGGQNRILVKNGLLKIAE 256

Query: 258 GKCRAGIRALLEVAG-REARTLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIGQAR 316
            + R G+ AL  VAG   + +L A  + F L PR+NAAGRL +  + + LL +   G+A 
Sbjct: 257 AR-RPGMAALKAVAGYNPSASLGAGQVVFGLAPRINAAGRLGEAEMALQLLRARKHGEAA 315

Query: 317 ALASDLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQGVVGILASR 376
            LA  LDA+N  RR  E  +  EA     +   S  A   G  ++  +WH GV+GI+ASR
Sbjct: 316 QLAQRLDAMNTDRRVEEDRILEEA----KRQAESQAASRMGFVLHGEDWHPGVIGIVASR 371

Query: 377 LKERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLS 436
           + E + RP +     GE  LKGSGRS++   +   L +       L + FGGH  AAG+S
Sbjct: 372 IVEAYYRPTLILCTEGE-TLKGSGRSVSEFDLHAGLSQC----ADLFLGFGGHRQAAGMS 426

Query: 437 LEESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELS---ARELTI-DTAEMLRDGGPWG 492
           L+ S  D  R+RF  +V + L  + L   +  DG+L    A + T+    EML+   P+G
Sbjct: 427 LKTSALDALRERFDTVVRQALGDTPLTASLKLDGDLGFEHASDFTVLKELEMLQ---PFG 483

Query: 493 QAFPEPTFDG---RFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPTFWPDSSIRE 549
               EP F       R L++      H++L +     G  L   A+     F        
Sbjct: 484 TGNAEPVFASPPLLVRGLRRFGKAREHVELELTDESCGVTLHAKAWRQSGEFSDRLRGTR 543

Query: 550 VQLAYRLDINEFRGNRSVQLIIEHLWP 576
           ++LAY   I+ + G  SV L I    P
Sbjct: 544 IRLAYTPRIDRYSGAASVDLRIRDWQP 570