Pairwise Alignments

Query, 510 a.a., PTS transporter subunit EIIC from Rahnella sp. WP5

Subject, 479 a.a., PTS maltose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

 Score =  207 bits (526), Expect = 9e-58
 Identities = 135/511 (26%), Positives = 249/511 (48%), Gaps = 56/511 (10%)

Query: 3   INYAQTAQDIVKYIGGDNNVISITHCATRLRFVLKDNKAVDKEELKRVKGVITVIEAGGQ 62
           ++Y   A+ +++ +GG +N+ ++ HCATRLR VL D   +++  ++ ++GV    +  GQ
Sbjct: 1   MDYPVIAKQLLESLGGKSNIQALAHCATRLRLVLNDETQINESAIESLQGVKGQFKVAGQ 60

Query: 63  MQVVIGNH-VSDAYNQVLKL-----IQIDENAPVSAPNVGIVSRVMDVISSIFTPFLYQL 116
            Q++ G+  V+  Y ++ KL     +  ++ A   A       R +  +S IF P +  +
Sbjct: 61  YQIIFGSGIVNQVYAEMAKLTGLVEMSTNDVASAGAEKQNWAQRAVKGLSDIFVPIIPAI 120

Query: 117 AACGILQGIISFLAAIG-------IMDASSGTYRILNFVSWTA---FTFLPVMIAFTAAK 166
            A G+L G+ + L A G       ++DA+ G   + + ++  A   F +LPV++AF+A++
Sbjct: 121 VAGGLLMGLFNVLTAPGLFIEGQSLIDANPGLADLASMINTFANAPFVYLPVLLAFSASR 180

Query: 167 KFNVNPFTAVITACALISPDYMNMLTAFKITSINSADPAMQQLMREAVSNPDIANILQNV 226
           KF  NPF        ++ PD +N    F   S++                          
Sbjct: 181 KFGGNPFLGAALGMLMVHPDLLNG-WGFGSASVSG------------------------- 214

Query: 227 VGIPVSAPTLDFLGIPVKYLSYTASVIPIILMVWAMSYIEHFFNKVLPVVIRNLFTPMFC 286
                + PT + LG  ++ + Y  SV+P+++  + ++ IE+   K++P V+ NL TPM  
Sbjct: 215 -----TVPTWNILGFEIEKVGYQGSVLPVLVSAYILAKIENGLRKIVPSVVDNLLTPMLA 269

Query: 287 IAIMVPMTLLVFGPVGNLIGGAIGGVYNYLYHLSPTIAGFVVGAFWQPLVTLGVHWGITP 346
           I I   +T  V GP+   +G  +G   N+LY  +  + G + G  + P V  G+H     
Sbjct: 270 IFITGFLTFTVVGPLTRDVGFMLGDALNWLYDSAGFVGGALFGFIYAPFVITGMHHSFIA 329

Query: 347 V---TVGNYATLGYDTFTGLQASAVFAMTGSMFGVYLKTRSREMKGISLSAGVTGLFGIT 403
           +    + +  T G      + A +  A   +   V + T+  ++KG+++ +GVT L GIT
Sbjct: 330 IETQLLADIVTTGGTFIFPIAAMSNIAQGAAALAVGVMTKETKLKGVAIPSGVTALLGIT 389

Query: 404 EPAIYGVALRLKKPFLCSCVAGGIGGAIAGSFNAVSWSYCLPGIAVLPVFFKEGHMPQFL 463
           EPA++GV L+L+ PF+ +     +  A    FN  + +    G A LP        PQ +
Sbjct: 390 EPAMFGVNLKLRYPFIAAICGAALASAFITLFNVKAQAL---GAAGLPGIISIN--PQQI 444

Query: 464 G-FLLSISVAFVLGALFTWLVGFKDEPDVAA 493
           G +++ ++++FV     T L+  +++   AA
Sbjct: 445 GYYIMGMAISFVAAFALTVLLAMREKTKQAA 475