Pairwise Alignments

Query, 510 a.a., PTS transporter subunit EIIC from Rahnella sp. WP5

Subject, 478 a.a., PTS trehalose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

 Score =  159 bits (401), Expect = 3e-43
 Identities = 125/496 (25%), Positives = 212/496 (42%), Gaps = 62/496 (12%)

Query: 7   QTAQDIVKYIGGDNNVISITHCATRLRFVLKDNKAVDK---EELKRVKGVITVIEAGGQM 63
           Q    +++ +GG++N+ S+THC TRLRFVL   +  DK   E L  VKG  T     GQ 
Sbjct: 11  QDVTRLIELVGGESNIASVTHCLTRLRFVLNQPEQADKAGLEALSMVKGCFT---NAGQF 67

Query: 64  QVVIGNHVSDAYNQVL-----KLIQIDENAPVSAPNVGIVSRVMDVISSIFTPFLYQLAA 118
           QVVIG  V   Y  +L     + +  D+    +  N+ ++ R +  ++ IF P L  +  
Sbjct: 68  QVVIGTEVDQVYKMLLEQTGKQAVSKDDAKVAARQNMNVLERGISHLAEIFVPLLPAIIT 127

Query: 119 CGILQGIISFLAAIGIMDASSGT---------YRILNFVSWTAFTFLPVMIAFTAAKKFN 169
            G++ G  + +  I + D  + T         +  L  +    F FLPV + ++  KK  
Sbjct: 128 GGLILGFRNVIGDIRMFDGKTLTEISQFWASVHAFLWLIGEAIFFFLPVGVCWSTVKKLG 187

Query: 170 VNPFTAVITACALISPDYMNMLTAFKITSINSADPAMQQLMREAVSNPDIANILQNVVGI 229
             P   +     L+SP  MN     K                     P++          
Sbjct: 188 GTPILGITLGVTLVSPQLMNAYLIGK-------------------EVPEV---------- 218

Query: 230 PVSAPTLDFLGIPVKYLSYTASVIPIILMVWAMSYIEHFFNKVLPVVIRNLFTPMFCIAI 289
                  DF    ++ + Y A VIP IL   A+++IE+   +V+P  +  +  P   I +
Sbjct: 219 ------WDFGLFAIEKVGYQAQVIPAILAGVALAFIENNLRRVVPSYLYLVVVPFVSIIV 272

Query: 290 MVPMTLLVFGPVGNLIGGAIGGVYNYLYHLSPTIAGFVV-GAFWQPLVTLGVHWGITPVT 348
            V +     GP G +IG  +             + G  + G  + PLV  G+H     V 
Sbjct: 273 SVVLAHAFIGPFGRVIGDGVAFAAKAAMTGDFAVIGSTLFGFMYAPLVITGIHHTTNAVD 332

Query: 349 VGNYATLGYDTFTGLQASAVFAMTGSMFGVYLKTRSREMKGISLSAGVTGLFGITEPAIY 408
           +     LG      L A +  A   ++ G+ + ++ +  + IS+ A ++   G+TEPA+Y
Sbjct: 333 LQLMQELGGTPIWPLIALSNIAQASAVVGIIIISKKQGERDISVPAAISAYLGVTEPAMY 392

Query: 409 GVALRLKKPFLCSCVAGGIGGAIAGSFNAVSWSYCLPGIAVLPVFFKEGHMPQFLG-FLL 467
           G+ L+ K P L + +   +  A+ GS   ++      G+  LP        PQF   +L+
Sbjct: 393 GINLKYKFPMLSAMIGSALAAAVCGSAGVMANGI---GVGGLPGIL--SIQPQFWSIYLV 447

Query: 468 SISVAFVLGALFTWLV 483
           ++ +A ++ A  T L+
Sbjct: 448 AMLIAILVPAALTLLM 463