Pairwise Alignments

Query, 550 a.a., flagellar hook-associated protein FlgK from Rahnella sp. WP5

Subject, 624 a.a., flagellar hook-associated protein FlgK from Vibrio cholerae E7946 ATCC 55056

 Score =  171 bits (434), Expect = 6e-47
 Identities = 125/449 (27%), Positives = 213/449 (47%), Gaps = 26/449 (5%)

Query: 1   MSSSLINTAMSGLNAAQAALSTTGNNIANVSVAGYNRQTAIITQSNGISTPAGY----IG 56
           M+S L+N     +  AQ  L+TTG+NI+NV+  GY+RQ+ I     G + P  Y     G
Sbjct: 1   MASDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVI----QGTNAPRQYGGETYG 56

Query: 57  NGVTVTGVNREYNSFVVKQLLGASATGSALSTQLDQASSIDDLLGD-SSTGIDATMSTFF 115
            GV V  V R ++ F VK+L  AS   +      +    +  LL   +S  I   ++ +F
Sbjct: 57  MGVHVENVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKKIPENLNEWF 116

Query: 116 KGLQTLTSNASDSAARQAVLGEAQGLTAQFNSSAKYLNDMNTAVNQQVTQNVDQINTYAS 175
             +++L  + +D  AR+ VL +++ ++   N   + +       N+ +   V++IN  A 
Sbjct: 117 DSVKSLADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLAL 176

Query: 176 QIAKLNSQITATRGSTGQEPNALLDQRDQLVSQLNNVTGVVVTQ-QDGDTYNISFANGTP 234
           +I  L   +    G      N L+D+ ++LVS+L+  T V VTQ + G+ +NI   NG  
Sbjct: 177 EIRDLQRLMMRVPG----PHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHT 232

Query: 235 LVSGGNAKTVVAMPSSADPSKLTVGMTQPDGSVSEIQESRLTTGSLGGTLTFRKDNLEPA 294
           LVSG  A  +  +    D  +  + M   +G   +   +R   G +   L  R +++   
Sbjct: 233 LVSGTEASQLRVIDGFPDTQQHRLAMV--EGKALKAISARDIGGKMEAILDMRDEHIPYL 290

Query: 295 INQLGQLALALSDSFNTTNKAGFDLNGDAGTDFFSFTGATTVSN----TKNTGSAQLSVA 350
           ++++G+LAL+ S   NT    G DL G+ G+  F+      ++     T +   A ++V 
Sbjct: 291 MDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKADMAVF 350

Query: 351 YTDTAAVKASDYTMAYNGTSWDVTRVSDGAKITPTAGTDSNGDPTMNFDGLSVSVTGTPN 410
             D + +K  +Y+M YNG+ + VT  S    + P           +  DGL V V   P 
Sbjct: 351 IEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVV------KGNVYVDGLRVEVRNPPQ 404

Query: 411 TNDSITIKTVSNVAGSMNLAISDSSLIAA 439
             + I ++   N A ++ LA  D++ IAA
Sbjct: 405 VGERILVRPTRNGAAAIRLATEDATKIAA 433



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 476 ASMVSNVGNQV-----STLTTTSTSQANIVTQLTAQQQSISGVNLDEEYG 520
           AS + NVG Q        L TT  + +N+ T+  ++Q  I G N   +YG
Sbjct: 2   ASDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYG 51