Pairwise Alignments

Query, 565 a.a., long-chain-fatty-acid--CoA ligase FadD from Rahnella sp. WP5

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (RefSeq) from Shewanella loihica PV-4

 Score =  785 bits (2026), Expect = 0.0
 Identities = 388/553 (70%), Positives = 469/553 (84%), Gaps = 1/553 (0%)

Query: 1   MEKVWLKRYPADVPENIDPDRYSSLVEMFENATLRYADNAAFINMGEVMTYRKLEERSRA 60
           ME++W K  P DVP  ID  +YSSL+++FE++  +YAD  AF+NMG  +TYRKLEERSRA
Sbjct: 1   MEQLWTKNLPHDVPAIIDAKQYSSLIDLFESSVAKYADQPAFVNMGATLTYRKLEERSRA 60

Query: 61  FAAYLQNELGLRKGDRVALMMPNLLQYPIALFGVLRAGMVVVNVNPLYTPRELEHQLNDS 120
           FAAYLQNEL L+KGDRVA+MMPNLLQYPIALFG+LRAGMVVVNVNPLYTPREL+HQLNDS
Sbjct: 61  FAAYLQNELKLQKGDRVAIMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLNDS 120

Query: 121 GASAIVIVSNFAHTLEKVVYKTQVKHVILTRMGDQLSAAKGTLVNFVVKYIKRLVPKYHL 180
           GA AIV+VSNFA+TLE+VV +T VK VILT +GD LSA K TLVNFVVKYIK++VPKYHL
Sbjct: 121 GAKAIVVVSNFANTLEQVVEQTPVKSVILTGLGDLLSAPKRTLVNFVVKYIKKMVPKYHL 180

Query: 181 PNAISFRTALQRGRRLQYIKPDIINNDLAFLQYTGGTTGVAKGAMLTHRNMQANLEQAKA 240
           P+AIS R +L +GRRLQY+KP I  +D+AFLQYTGGTTGV+KGAMLTH N+ +NL QA A
Sbjct: 181 PHAISMRQSLSKGRRLQYVKPTIKGDDIAFLQYTGGTTGVSKGAMLTHGNIVSNLLQADA 240

Query: 241 AYAPLLQPGHELVVTALPLYHIFALTVNCLLFLELGGKSLLITNPRDVPGMVKELGKYPF 300
           AY+PLL  G E VVTALPLYHIFALTVNCLLFL  G  +LLITNPRD+P  V EL K+PF
Sbjct: 241 AYSPLLADGKEFVVTALPLYHIFALTVNCLLFLHKGANNLLITNPRDIPAFVSELKKHPF 300

Query: 301 TAISGVNTLFNALLNNEDFRELDFSSLRLSVGGGMSVQKSVAEKWEKLTGKHLLEGYGLT 360
           TA++GVNTLFNAL+++E+F+ LDFS+L+LS+GGGM+VQ++VA+KW+ +T   LLEGYGLT
Sbjct: 301 TALTGVNTLFNALVSSEEFKTLDFSNLKLSIGGGMAVQRAVADKWQGITKTRLLEGYGLT 360

Query: 361 ECSPLVSGNPYDLKHYSGSIGLPVPSTEVRLVDDNGKDVGPGQPGELWVKGPQVMLGYWQ 420
           E SPL++  PY+L+ Y+GSIG PV +T++++ D+ G  +  G+ GEL+ KGPQVM GYWQ
Sbjct: 361 EASPLLTCCPYNLEGYNGSIGFPVANTDMQVRDEEGNVLPQGETGELFAKGPQVMKGYWQ 420

Query: 421 RPSATDEVL-KDGWLSTGDIVTVDEQGFLRIVDRKKDMILVSGFNVYPNEIEEVVSQHDK 479
           RP  T +V+ KDG+L+TGDI  +DEQGF  IVDRKKDMILVSGFNV+PNE+EEVV+ H K
Sbjct: 421 RPEETAKVIDKDGYLATGDIGYMDEQGFFFIVDRKKDMILVSGFNVFPNEVEEVVALHPK 480

Query: 480 VLEVAAIGVPDESSGEIVKICVVKKDPSLTSEELLAHCRRLLTGYKVPKIVEFRDELPKS 539
           VLEVAA+GVP E SGE+VK+ VV KD SLT E+++ HCR  LTGYK+PK+VEFRDELPKS
Sbjct: 481 VLEVAAVGVPHEVSGELVKVFVVPKDKSLTEEQVIKHCRHHLTGYKIPKLVEFRDELPKS 540

Query: 540 NVGKILRRELRDE 552
           NVGKILRRELRDE
Sbjct: 541 NVGKILRRELRDE 553