Pairwise Alignments

Query, 565 a.a., long-chain-fatty-acid--CoA ligase FadD from Rahnella sp. WP5

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  789 bits (2037), Expect = 0.0
 Identities = 391/553 (70%), Positives = 465/553 (84%), Gaps = 1/553 (0%)

Query: 1   MEKVWLKRYPADVPENIDPDRYSSLVEMFENATLRYADNAAFINMGEVMTYRKLEERSRA 60
           M++ W++  P DVP  I+ D+YSSL++MFE A  +YAD  AFINMG  +TYRKLEERSRA
Sbjct: 1   MDQPWIRHLPKDVPAEINVDQYSSLIDMFETAVAKYADQPAFINMGATLTYRKLEERSRA 60

Query: 61  FAAYLQNELGLRKGDRVALMMPNLLQYPIALFGVLRAGMVVVNVNPLYTPRELEHQLNDS 120
           FAAYLQNEL L+KGDRVALMMPNLLQYPIALFG+LRAGMVVVNVNPLYTPREL+HQL DS
Sbjct: 61  FAAYLQNELKLQKGDRVALMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLIDS 120

Query: 121 GASAIVIVSNFAHTLEKVVYKTQVKHVILTRMGDQLSAAKGTLVNFVVKYIKRLVPKYHL 180
           GA AIV+VSNFA TLE+VV +T VK VI+T +GD LSA K TLVNFVVKYIK+LVPKY L
Sbjct: 121 GAKAIVVVSNFARTLEEVVDQTPVKSVIITGLGDLLSAPKRTLVNFVVKYIKKLVPKYDL 180

Query: 181 PNAISFRTALQRGRRLQYIKPDIINNDLAFLQYTGGTTGVAKGAMLTHRNMQANLEQAKA 240
           P+A+S R  L RGRR+QY+KP I  +DLAFLQYTGGTTGV+KGAMLTH N+ AN+ QA  
Sbjct: 181 PHALSMRETLSRGRRMQYVKPVITGDDLAFLQYTGGTTGVSKGAMLTHSNVVANVLQANG 240

Query: 241 AYAPLLQPGHELVVTALPLYHIFALTVNCLLFLELGGKSLLITNPRDVPGMVKELGKYPF 300
           AY+P L+ G E VVTALPLYHIFALTVNCLLFL  G ++LLITNPRD+PG V EL KYPF
Sbjct: 241 AYSPALRDGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPF 300

Query: 301 TAISGVNTLFNALLNNEDFRELDFSSLRLSVGGGMSVQKSVAEKWEKLTGKHLLEGYGLT 360
           TA++GVNTLFNAL+N+ DF ELDFS L+LS+GGGM+VQK+VA+KW+ +T   LLEGYGLT
Sbjct: 301 TALTGVNTLFNALVNSSDFSELDFSRLKLSIGGGMAVQKAVADKWQNITKTRLLEGYGLT 360

Query: 361 ECSPLVSGNPYDLKHYSGSIGLPVPSTEVRLVDDNGKDVGPGQPGELWVKGPQVMLGYWQ 420
           E SPL++  PY+L  Y+GSIG P PST +++ DD G  +  G+ GEL+ KGPQ+M GYWQ
Sbjct: 361 EASPLLTCCPYNLDGYNGSIGFPAPSTLIQVRDDAGNVLPQGETGELFGKGPQIMKGYWQ 420

Query: 421 RPSATDEVL-KDGWLSTGDIVTVDEQGFLRIVDRKKDMILVSGFNVYPNEIEEVVSQHDK 479
           RP  T +V+  DGWL+TGDI  +DEQGF  IVDRKKDMILVSGFNV+PNE+EEVV+ H K
Sbjct: 421 RPEETAKVIDNDGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK 480

Query: 480 VLEVAAIGVPDESSGEIVKICVVKKDPSLTSEELLAHCRRLLTGYKVPKIVEFRDELPKS 539
           V+EVAA+GVP+++SGE+VK+ VVKKD SLT+E+++ HCR  LTGYKVPK+VEFRDELPK+
Sbjct: 481 VIEVAAVGVPNDASGELVKVFVVKKDKSLTAEDIIKHCRVHLTGYKVPKLVEFRDELPKT 540

Query: 540 NVGKILRRELRDE 552
           NVGKILRRELRDE
Sbjct: 541 NVGKILRRELRDE 553