Pairwise Alignments

Query, 526 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  168 bits (425), Expect = 5e-46
 Identities = 153/546 (28%), Positives = 240/546 (43%), Gaps = 58/546 (10%)

Query: 10  RKNTKTQVAGAIFLALSGLSFATQAAVPKDMLVIGKAADPQTLDPAV-TIDNNDWTVTYP 68
           +K T    A AI   ++G +++          V      P+  DP + T         + 
Sbjct: 2   KKLTTLLAATAIATLMAGTAWSKT-------FVFCSEGSPEGFDPGLYTAGTTFDAAAHT 54

Query: 69  AYQRLVQYKTEDGKGSTQVEGDLAASWTASPDQLVWTFKLKPGAKFDDGS------DVNA 122
            Y RL+++K    KG+T+ E  LA SWT S D L +TFKL+PG KF          ++NA
Sbjct: 55  VYSRLLEFK----KGTTETEPGLAESWTISDDGLEYTFKLRPGVKFQTTEFFTPTRELNA 110

Query: 123 DAVKWSFERLMK--------IGQGPSEAF-----PKDM-TVTVVDPMTVTFTLKTPFAPF 168
           D V +S ER  K        +  G  E F     P+ + +V  VD MTV   LK   APF
Sbjct: 111 DDVIFSIERQWKSDHPWHGYVTGGSWEYFAGMGLPELLESVEKVDDMTVKIKLKRKEAPF 170

Query: 169 LYTLANDGAGIVNPAIAKANPADEGKAWLAGHTAGSGPYKLDRWQKGQQLVLVPNPHYSG 228
           L  LA   A I++   A    A+     L     G+GP+    +Q+   +    +P + G
Sbjct: 171 LANLAMPFASIMSKEYADKLQAEGKMNQLNQMPLGTGPFAFVGYQQDAVIRYKAHPDFWG 230

Query: 229 TKPAFKRVTVKIIGESATRRLQLSRGDLDIADSLPMDQLAALKKENKVAVEEFPSLRVTY 288
            K     +   I  ++A R  +L  G+  +        + A+K +  + V E   L V Y
Sbjct: 231 GKQKIDDLVFAITTDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNVAY 290

Query: 289 LYLNNGKTPLNQVDLRRAISSAVDYQGMVKGILGGNAKQMRGPIPDGMWGFDPTAKQYTL 348
           L  N  + P ++V++R+A++ A++ Q +V  +  G A     PIP  MW ++   +  T 
Sbjct: 291 LAYNTTQPPFDKVEVRKALNKAINKQAIVDAVFQGQATPATNPIPPTMWSYNEHIEDDTY 350

Query: 349 DLTQAKADLE---------KVKDKPQTLDFLYSDNDPNWESIALSVQASLGQAGINVKL- 398
           D   AK  LE         KV   P    ++      N    A  +QA   + G+ V++ 
Sbjct: 351 DPEAAKKMLEDAGVKDLSMKVWAMPVARPYML-----NARRAAELMQADFAKVGVKVEIV 405

Query: 399 -----EKLANATMRDRIGQGDYDISIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYSN 453
                E L  +  +DR G       I  W+ D  DP  F++     D  G   NR+ + +
Sbjct: 406 SYEWAEYLEKSKAKDRDG-----AVILGWTGDNGDPDNFLDTLLGCDAVG-GNNRAQWCD 459

Query: 454 PDVDALLKKAVSVTDQKQRTDYYQQAQKIVIDEAAYVYLFQKNYQVAMNKDVKGFVFNPM 513
            + D L+ KA   +D  +RT  Y++AQ +   EA +  L      V M K+V+GFV +P+
Sbjct: 460 KEFDELVTKAKEASDVAERTKLYEEAQVVFKREAPWATLDHSLSIVPMRKNVEGFVQSPL 519

Query: 514 LEQVFN 519
            +  F+
Sbjct: 520 GDFAFD 525