Pairwise Alignments

Query, 279 a.a., diaminopimelate epimerase from Rahnella sp. WP5

Subject, 267 a.a., diaminopimelate epimerase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  133 bits (335), Expect = 4e-36
 Identities = 94/269 (34%), Positives = 135/269 (50%), Gaps = 22/269 (8%)

Query: 3   FHRYHGLGNDYL-VCHHRVAALLSNQQIRRICDRHYGIGSDGLLI--DNDDADIPSLRII 59
           F + HG GNDY+ V   R       ++       H GIGSDGL++   +D AD  S+RI 
Sbjct: 7   FTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKADF-SMRIF 65

Query: 60  NPDGSEAEKSGNGLRIYARYLFDIGRVAHEPFLVNTPGG--QVRCEVTDG-AHQVIVDMG 116
           N DGSEA   GNG R   +Y+++ G  A +   ++T  G   ++  V  G    V VDMG
Sbjct: 66  NADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTAVTVDMG 125

Query: 117 QAKFSPAALPASVEGDEALALPIVAGGHNLSATLVSMGNPHCVIRVDKLDLDLVKQLGSE 176
               SP    A   GD+              +T VSMGNPH V  V+ +    + ++G +
Sbjct: 126 ----SPLETEAVDFGDQ----------FPFQSTRVSMGNPHLVTFVEDITQINLPEIGPQ 171

Query: 177 IETLAIFPKRTNVQFAQVLDRKNISIGIWERGAGYTLASGSSSCAAASAMRKLGLVDDHV 236
           +E   +FP RTNV+FAQ++ +  I + +WERG+G T A G+ +CA A A    GL     
Sbjct: 172 LENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAVLHGLAGRKC 231

Query: 237 TVHMPGGKLAISF-SGDFQVNMRGPVQKI 264
            + M GG + I +      + M GP  K+
Sbjct: 232 DIIMDGGTVTIEWEEATGHILMTGPATKV 260