Pairwise Alignments

Query, 338 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Rahnella sp. WP5

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas fluorescens FW300-N1B4

 Score = 66.6 bits (161), Expect = 8e-16
 Identities = 65/297 (21%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 6   MKILLIASAVSLACLSAQAAE-----RIAFIPKLVGVGYFTSGGNGAMAAGKALGAD--- 57
           + + ++A+A +   +S+  AE     ++A + K +   +F +  +GA A  K    D   
Sbjct: 10  LAVAMLAAASAALPVSSAFAETPEKPKVALVMKSLANEFFLTMEDGAKAYQKDHSGDFEL 69

Query: 58  VTYDGPTEPSVSGQVQMINNFVNQGYNAIVVAAVSPDGLCPALKRAMQRGVKVLTWDSDT 117
           ++     E   +GQ +++   +    NA+V+A      + P +K+A+  G+ V+  D+  
Sbjct: 70  ISNGIKDETDTAGQTRIVEQMILSKVNALVIAPADSKAMVPVIKKAVDAGITVINIDNQL 129

Query: 118 KP---ECRSIYIN-QGTPQQLGSMLVEMTSSQVKKEKAKVAFFYSSPTVTDQNQWVKEAK 173
            P   + ++I +   G   + G+ LV    ++  K   +V       T T+  Q  + A 
Sbjct: 130 DPAVVKSKNITVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTNAQQ--RTAG 187

Query: 174 AKIAKEHPGWEIVTTQYGYNDATKSLQTAEGILKSYGDLDAIIA-PDANALPAAAQAAEN 232
            K A E    ++V+ Q G  +  K  + A  +L  Y ++ A++A  D+ A+ A +     
Sbjct: 188 FKDAMEAAQIKVVSLQSGDWEIDKGGKVASSMLSEYPNIKALLAGNDSMAVGAVSAVRAA 247

Query: 233 LKRTNVTIVGFSTPNVMRPYVERGTVKQFGLWDVVSQGKISVYVADQLLKKGALNVG 289
            K   V +VG+   N ++P ++ G V          Q    +  A +++K   ++ G
Sbjct: 248 GKAGKVQVVGYDNINAIKPMLKDGRVLATADQFAARQAVFGIETALKIIKGETVDSG 304