Pairwise Alignments

Query, 338 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Rahnella sp. WP5

Subject, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 7   KILLIASAVSLACLSAQAAE--RIAFIPKLVGVGYFTSGGNGAM-AAGKALGADVTYDGP 63
           ++L++  A+ L  +S+   +  ++A +PK   V +F    NG + AA +  G +  Y GP
Sbjct: 3   RLLMLIIALGLLPISSVYGKELKLALVPKFYSV-FFDQSKNGCIDAAAQIEGVECIYRGP 61

Query: 64  TEPSVSGQVQMINNFVNQGYNAIVVAAVSPDGLCP-ALKRAMQRGVKVLTWDSD 116
              SV  Q Q+IN  +++G + I VA      L   +LKRA + G+ ++T+DSD
Sbjct: 62  EISSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENSLKRAKEVGIPIVTYDSD 115