Pairwise Alignments

Query, 369 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotF from Rahnella sp. WP5

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  401 bits (1031), Expect = e-116
 Identities = 195/360 (54%), Positives = 269/360 (74%), Gaps = 4/360 (1%)

Query: 9   LSGVVAGLVMAASVTASADEKTLHIYNWSDYIAPNTVPDFQKETGIKVVYDVFDSNEVLE 68
           L+ V AG+  ++ V+A   E+ + +YNWSDYIA +T+ +F+KETGIKV+YDVFDSNEV+E
Sbjct: 10  LALVTAGVFTSSVVSA---EEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFDSNEVVE 66

Query: 69  GKLMAGSTGFDLVVPSASFLERQLAAGVFQPLDKSKLPNYKNMDPELLKMVAQHDPGNKY 128
            KL++G +G+D+VVPS +FL +Q+ AG FQ LD+S+L N+KN++PEL+K +   DP N++
Sbjct: 67  AKLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLETADPRNEH 126

Query: 129 AIPYLWATTGIGYNVDKVKAVLGKDAPVDSWDLVLKPENLEKLKSCGVSFLDAPAEIYAT 188
           A+PYLW TTGIGYN  KVK VLG+DAPVDS +L+  P+  EK+  CG S LD+  E+   
Sbjct: 127 AVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDSADEMLPM 186

Query: 189 VLNYLHLDPNSTKASDYTGAANDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVM 248
            + YL LDPNSTK+ DY   A +++ K+RP + YFHSS+YI DLANGDICVA G++GDV 
Sbjct: 187 AMIYLGLDPNSTKSEDY-AKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFGYSGDVF 245

Query: 249 QAGNRAKEAKNGVNVAYSIPKEGALAFFDVFAIPADAKNLDEAYQFLNYLMEPKVIAQIS 308
           QA  RA+EA+NG  + Y+IPKEG+  +FD+ AIPADAKN+  A+ F+NYL+ P+VIA I+
Sbjct: 246 QAAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPEVIAPIT 305

Query: 309 NTVYYASGNKAATPLVNEDVRNNPGIYPPADVQAKLFTLKVQDPKIDRVITRSWTKVKTG 368
           N V YA+ N  A  LV+E++RN+  IYP  +V ++L+   V+  K  R +TR WTKVK+G
Sbjct: 306 NYVAYANPNVPAQELVDEEIRNDAAIYPTPEVLSRLYVADVRPMKAQRAMTRVWTKVKSG 365