Pairwise Alignments

Query, 369 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotF from Rahnella sp. WP5

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  407 bits (1047), Expect = e-118
 Identities = 198/362 (54%), Positives = 274/362 (75%), Gaps = 5/362 (1%)

Query: 9   LSGVVAGLVMAASVTASADEKTLHIYNWSDYIAPNTVPDFQKETGIKVVYDVFDSNEVLE 68
           L+ V AG + + +V A   E+ + +YNWSDYIA +T+ +F+KETGI+V+YDVFDSNEV+E
Sbjct: 10  LALVTAGTLASVAVQA---EEVVRMYNWSDYIAEDTLENFKKETGIRVIYDVFDSNEVVE 66

Query: 69  GKLMAGSTGFDLVVPSASFLERQLAAGVFQPLDKSKLPNYKNMDPELLKMVAQHDPGNKY 128
            KL++G +G+D+VVPS  FL +Q+ AG F+PLD+SKL N+KN++ +L+K++ + DPGN+Y
Sbjct: 67  AKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLEKADPGNQY 126

Query: 129 AIPYLWATTGIGYNVDKVKAVLGKDAP-VDSWDLVLKPENLEKLKSCGVSFLDAPAEIYA 187
           A+PYLW T GIGYN++KVKA +G+DAP  +S +L+  P+  EK+  CG + LD+  ++  
Sbjct: 127 AVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAMLDSADDMVP 186

Query: 188 TVLNYLHLDPNSTKASDYTGAANDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDV 247
             + YL LDPNSTKA DY   A +LL K+RP + YFHSS+YI+DLANGDICVA G++GDV
Sbjct: 187 QAMIYLGLDPNSTKAEDYE-KAGELLEKIRPYVTYFHSSRYISDLANGDICVAYGFSGDV 245

Query: 248 MQAGNRAKEAKNGVNVAYSIPKEGALAFFDVFAIPADAKNLDEAYQFLNYLMEPKVIAQI 307
            QA  RA EA NG  + YSIPKEGA  +FD+ AIPADA N++ A++ +NYL+ P+VIA I
Sbjct: 246 FQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLRPEVIAPI 305

Query: 308 SNTVYYASGNKAATPLVNEDVRNNPGIYPPADVQAKLFTLKVQDPKIDRVITRSWTKVKT 367
           SN V YA+ N  A PLV+E +RN+P IYPP +V  KL+  +++  KI RV+TR WTKVK+
Sbjct: 306 SNYVAYANPNDLAQPLVDEAIRNDPAIYPPKEVLDKLYIGEIRPLKIQRVLTRVWTKVKS 365

Query: 368 GK 369
           G+
Sbjct: 366 GQ 367