Pairwise Alignments

Query, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Rahnella sp. WP5

Subject, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

 Score = 87.4 bits (215), Expect = 7e-22
 Identities = 96/387 (24%), Positives = 163/387 (42%), Gaps = 42/387 (10%)

Query: 3   CALYTAGTCRSCQWLDKPYLQQLADKQRDLSDLLSDLPVDEWC--EPVTGPESAFRNKAK 60
           CA Y    C  C         Q+  KQ+ LS L+            PV   +  +R +A+
Sbjct: 82  CAHYAQ--CGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139

Query: 61  MVV--SGSVERPLLGMLHRDGTP-VDLCECPLYPASFPAVFSVLKIFIARAGLTPYNVAR 117
           + +      ++  LG   +     V++  CP+   S  A+   L      A L+ ++   
Sbjct: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLN-----ALLSEWSQPE 194

Query: 118 KRGELKFLLLTESQKDGGMMLRFVLRSDAKLAQLRAALPWLQQQLPQLKVISANIQPVHM 177
           + G ++   L +      ++LR           L A +   QQ+L      S N   +++
Sbjct: 195 RLGHVE---LVKGDNTRVLVLR----------HLGALIEQDQQRLTDFA--SQNQLTLYL 239

Query: 178 AILEGDTEIPLTDVQRLEEDFNHVPLFIRPQSFFQTNPVVAEKLYATARDWVRARGDIRS 237
            +  G+ +    +    EE  + +     P  F Q N  V + +   A +W+      R 
Sbjct: 240 MLEAGELQHVQGEAPYCEETGSRLSFL--PSHFIQVNRAVNQHMVVQALNWLEVSPQERV 297

Query: 238 MWDLFCGVGGFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNVEF------QALDS 291
           + DLFCG+G F L  A     + G+E   E +  A  +A    + NV F      Q + S
Sbjct: 298 L-DLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTS 356

Query: 292 TGFATGKGEVPDLVLVNPPRRGIGKALCEYLSHMAPDRILYSSCNAQTMAQDLALL--PD 349
             +A  K      VL++P R G  + + + LS +   R++Y SCN  T+A+D   L    
Sbjct: 357 ASWAQQKFAK---VLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQG 412

Query: 350 YHILRVRLFDMFPHTAHYEVMALLVRR 376
           + + ++ + DMFPHT+H E MAL V++
Sbjct: 413 FRLEKLGMLDMFPHTSHLESMALFVKK 439