Pairwise Alignments

Query, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Rahnella sp. WP5

Subject, 454 a.a., RNA methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  108 bits (269), Expect = 4e-28
 Identities = 105/398 (26%), Positives = 174/398 (43%), Gaps = 35/398 (8%)

Query: 9   GTCRSCQWLDKPYLQQLADKQRDLSDLLSDLPVDEWCE--PVTGPESA--FRNKAKMVVS 64
           G C  C+W   PY +Q+  KQ+ + D L  +   E  E  P+ G      +RNK +   S
Sbjct: 62  GVCGGCKWQVLPYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFS 121

Query: 65  GSVERPLLGMLHRDGTPVDLCECPLY--PASFPAVFSVLKIFIA-------RAGLTPY-- 113
              +R L     R     D      +  P +F  V ++ K ++        R  +  Y  
Sbjct: 122 N--KRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAY 179

Query: 114 -------NVARKRGELKFLLLTESQKDGGMMLRFVLR--SDAKLAQLRAALPWLQQQLPQ 164
                  N+  + G L+ L++  S   G +M+  + +   D ++   +  L ++    P+
Sbjct: 180 EHDYSFINLRTQEGMLRNLIIRTSST-GELMVIVICKITEDHEMELFKQLLQFIADSFPE 238

Query: 165 LKVISANIQ-PVHMAILEGDTEIPLTDVQRLEEDFNHVPLFIRPQSFFQTNPVVAEKLYA 223
           +  +   I    +  I + D  +       + E+   +   + P+SF+QTN   A  LY 
Sbjct: 239 ITSLLYIINNKCNDTINDLDVHV-FKGKDHMFEEMEGLRFKVGPKSFYQTNSEQAYNLYK 297

Query: 224 TARDWVRARGDIRSMWDLFCGVGGFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQN 283
            AR++    G    ++DL+ G G      +    ++ GIE   EAI  AK +A    ++N
Sbjct: 298 IAREFAGLTGK-ELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKN 356

Query: 284 VEFQALDSTGFAT----GKGEVPDLVLVNPPRRGIGKALCEYLSHMAPDRILYSSCNAQT 339
             F A D     T     +   PD+++ +PPR G+ + + + +    P RI+Y SCN  T
Sbjct: 357 ALFYAGDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 416

Query: 340 MAQDLALLP-DYHILRVRLFDMFPHTAHYEVMALLVRR 376
            A+DL LL   Y +  V+  DMFPHT H E + LL  R
Sbjct: 417 QARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLLELR 454