Pairwise Alignments

Query, 340 a.a., flagellar motor switch protein FliM from Rahnella sp. WP5

Subject, 322 a.a., flagellar motor switch protein FliM from Pseudomonas fluorescens FW300-N2E3

 Score =  246 bits (629), Expect = 4e-70
 Identities = 132/325 (40%), Positives = 198/325 (60%), Gaps = 11/325 (3%)

Query: 5   ILSQAEIDALLNGDSDSDNASNTAAAAKTAASDDGVKPFDPTTQRRVVRERLQALEIINE 64
           +LSQ EIDALL+G  D             AA    VK +D T+Q R+VR R+  LE+INE
Sbjct: 6   LLSQDEIDALLHGVDDG------LVQTDNAAEPGSVKSYDLTSQDRIVRGRMPTLEMINE 59

Query: 65  RFARHFRMGLFNLLRRSPDITVGAIKIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFA 124
           RFAR+ R+ +FN+LRRS D+ VG +++  + ++  +L VPT+LNL+ +KPLRGTALF+  
Sbjct: 60  RFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILD 119

Query: 125 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIKRMLRLALDAYEDAWSGVYKLSVEY 184
             LVF  VDN FGGDGR   K+EGREFT TE RV++ +L  A    ++AW  + +++ EY
Sbjct: 120 AKLVFKLVDNFFGGDGRH-AKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEVNFEY 178

Query: 185 VRAELQIKFTNITSSPNDIVVTTPFHVEIGALSGDFNICIPFSMIEPLRELLTNPPVENS 244
           + +E+     NI   P++ VV + FH+E+    GD ++ +P+SMIEP+RE+L      + 
Sbjct: 179 INSEVNPAMANIV-GPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDL 237

Query: 245 RNEESQWRENLVHQVQQSELELVANFVEIPLRLSQILKLKPGDVLPIEKPDRLIAHVDGV 304
            +++ +W   L   V   ++ + A      LRL  IL ++PGDV+P++ P+ +I   +GV
Sbjct: 238 DDQDERWVNALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDVIPVDMPEEMIMRANGV 297

Query: 305 PVLTSQYGTLNEQYALRVEHLINPI 329
           P    + G+     AL+V   I PI
Sbjct: 298 PAFKVKMGSHKGNLALQV---IEPI 319