Pairwise Alignments

Query, 340 a.a., flagellar motor switch protein FliM from Rahnella sp. WP5

Subject, 322 a.a., Flagellar motor switch protein FliM from Pseudomonas syringae pv. syringae B728a

 Score =  240 bits (612), Expect = 4e-68
 Identities = 134/329 (40%), Positives = 198/329 (60%), Gaps = 19/329 (5%)

Query: 5   ILSQAEIDALLNGDSD----SDNASNTAAAAKTAASDDGVKPFDPTTQRRVVRERLQALE 60
           +LSQ EIDALL+G  D    +DN S   +          VK +D T+Q R+VR R+  LE
Sbjct: 6   LLSQDEIDALLHGVDDGMVQTDNNSEPGS----------VKSYDLTSQDRIVRGRMPTLE 55

Query: 61  IINERFARHFRMGLFNLLRRSPDITVGAIKIQPYHDFARNLPVPTNLNLIHLKPLRGTAL 120
           +INERFAR+ R+ +FNLLRRS D+ VG +++  + ++  +L VPT+LNL  +KPLRGTAL
Sbjct: 56  MINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTAL 115

Query: 121 FVFAPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIKRMLRLALDAYEDAWSGVYKL 180
           F+    LVF  VDN FGGDGR   K+EGREFT TE RV++ +L  A    ++AW  + ++
Sbjct: 116 FILDAKLVFKLVDNFFGGDGRH-AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV 174

Query: 181 SVEYVRAELQIKFTNITSSPNDIVVTTPFHVEIGALSGDFNICIPFSMIEPLRELLTNPP 240
           + EY+ +E+     NI   P++ VV + FH+E+    GD ++ +P+SMIEP+RE+L    
Sbjct: 175 NFEYINSEVNPAMANIV-GPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGF 233

Query: 241 VENSRNEESQWRENLVHQVQQSELELVANFVEIPLRLSQILKLKPGDVLPIEKPDRLIAH 300
             +  +++ +W   L   V    + L     +  L L  IL ++PGDV+P+E  D L+  
Sbjct: 234 QSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSDSLVMR 293

Query: 301 VDGVPVLTSQYGTLNEQYALRVEHLINPI 329
            +GVP    + G+   + AL+V   I PI
Sbjct: 294 ANGVPSFKVKLGSHKGKMALQV---IEPI 319