Pairwise Alignments

Query, 340 a.a., flagellar motor switch protein FliM from Rahnella sp. WP5

Subject, 342 a.a., flagellar motor switch protein FliM (RefSeq) from Shewanella amazonensis SB2B

 Score =  251 bits (640), Expect = 2e-71
 Identities = 121/320 (37%), Positives = 204/320 (63%), Gaps = 12/320 (3%)

Query: 5   ILSQAEIDALLNG--DSDSDNASNTAAAAKTAASDDGVKPFDPTTQRRVVRERLQALEII 62
           +LSQ EIDALL+G  D + +  S   A+A++         +D ++Q R+VR R+  LEI+
Sbjct: 4   LLSQDEIDALLHGVDDVEEEEVSEAGASARS---------YDFSSQDRIVRGRMPTLEIV 54

Query: 63  NERFARHFRMGLFNLLRRSPDITVGAIKIQPYHDFARNLPVPTNLNLIHLKPLRGTALFV 122
           NERFARH R+ +FN++RR+ ++++  +++  + ++   L VPT+LN++  +PL+GTAL  
Sbjct: 55  NERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFQPLKGTALIT 114

Query: 123 FAPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIKRMLRLALDAYEDAWSGVYKLSV 182
               LVFI VDN FGGDGRF  K+EGREFT TE+R+++ +L++  + Y+DAW+ V  +  
Sbjct: 115 MEARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEF 174

Query: 183 EYVRAELQIKFTNITSSPNDIVVTTPFHVEIGALSGDFNICIPFSMIEPLRELLTNPPVE 242
           +Y+ +E+     NI  SP ++VV   FH+E+    GDF+I +P+SMIEP+RELL      
Sbjct: 175 DYLDSEVNPAMANIV-SPTEVVVVNSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQS 233

Query: 243 NSRNEESQWRENLVHQVQQSELELVANFVEIPLRLSQILKLKPGDVLPIEKPDRLIAHVD 302
           + ++ + +W + L  ++   E+   A  VE  + L  +++++ GDV+P+E P+ ++  ++
Sbjct: 234 DKQDTDMRWSQALKDEIMDVEVGFEATVVEHQISLRDVMEMQAGDVIPVELPEYVLMKIE 293

Query: 303 GVPVLTSQYGTLNEQYALRV 322
            +P    + G   EQ AL++
Sbjct: 294 ELPTYRCKLGKSREQLALKI 313