Pairwise Alignments

Query, 340 a.a., flagellar motor switch protein FliM from Rahnella sp. WP5

Subject, 323 a.a., flagellar motor switch protein FliM from Pseudomonas aeruginosa PA14

 Score =  253 bits (646), Expect = 5e-72
 Identities = 133/318 (41%), Positives = 199/318 (62%), Gaps = 8/318 (2%)

Query: 5   ILSQAEIDALLNGDSDSDNASNTAAAAKTAASDDGVKPFDPTTQRRVVRERLQALEIINE 64
           +LSQ EIDALL+G  D           +  A+   VK +D T+Q R+VR R+  LE+INE
Sbjct: 6   LLSQDEIDALLHGVDDG------LVETEVEATPGSVKSYDLTSQDRIVRGRMPTLEMINE 59

Query: 65  RFARHFRMGLFNLLRRSPDITVGAIKIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFA 124
           RFAR+ R+ +FNLLRRS D+ VG +++  + ++  +L VPT+LNL+ +KPLRGTALF+  
Sbjct: 60  RFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILD 119

Query: 125 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIKRMLRLALDAYEDAWSGVYKLSVEY 184
             LVF  VDN FGGDGR   K+EGREFT TE RV++ +L  A    ++AW  V +++ EY
Sbjct: 120 AKLVFKLVDNFFGGDGRH-AKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMNFEY 178

Query: 185 VRAELQIKFTNITSSPNDIVVTTPFHVEIGALSGDFNICIPFSMIEPLRELLTNPPVENS 244
           V +E+     NI  SP+++VV + FH+E+    GD +I +P+SMIEP+RE+L      + 
Sbjct: 179 VNSEVNPAMANIV-SPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDH 237

Query: 245 RNEESQWRENLVHQVQQSELELVANFVEIPLRLSQILKLKPGDVLPIEKPDRLIAHVDGV 304
            +++ +W + L   V   ++ L A  V   L+L  IL ++PGDV+P+E P+ ++   +GV
Sbjct: 238 DDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPEHMVMRANGV 297

Query: 305 PVLTSQYGTLNEQYALRV 322
           P    + G      AL++
Sbjct: 298 PAFKVKLGAHKGNLALQI 315