Pairwise Alignments

Query, 340 a.a., flagellar motor switch protein FliM from Rahnella sp. WP5

Subject, 343 a.a., flagellar motor switch protein FliM (RefSeq) from Shewanella sp. ANA-3

 Score =  248 bits (632), Expect = 2e-70
 Identities = 121/318 (38%), Positives = 199/318 (62%), Gaps = 7/318 (2%)

Query: 5   ILSQAEIDALLNGDSDSDNASNTAAAAKTAASDDGVKPFDPTTQRRVVRERLQALEIINE 64
           +LSQ EIDALL+G  D +  +   AA   A S      +D ++Q R+VR R+  LEI+NE
Sbjct: 4   LLSQDEIDALLHGVDDVEEDNELDAAGLEARS------YDFSSQDRIVRGRMPTLEIVNE 57

Query: 65  RFARHFRMGLFNLLRRSPDITVGAIKIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFA 124
           RFARH R+ +FN++RR+ ++++  +++  + ++   L VPT+LN++   PL+GTAL    
Sbjct: 58  RFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITME 117

Query: 125 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIKRMLRLALDAYEDAWSGVYKLSVEY 184
             LVFI VDN FGGDGRF  K+EGREFT TE+R+++ +L++  + Y+DAW+ V  +  +Y
Sbjct: 118 ARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDY 177

Query: 185 VRAELQIKFTNITSSPNDIVVTTPFHVEIGALSGDFNICIPFSMIEPLRELLTNPPVENS 244
           + +E+     NI  SP ++VV   FH+E+    GDF+I +P+SMIEP+RELL      + 
Sbjct: 178 LDSEVNPAMANIV-SPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDK 236

Query: 245 RNEESQWRENLVHQVQQSELELVANFVEIPLRLSQILKLKPGDVLPIEKPDRLIAHVDGV 304
           ++ + +W + L  ++   ++   A+ VE  L L  ++  K GD++PIE P+ ++  ++ +
Sbjct: 237 QDTDMRWSQALHDEIMDVKVGFDASVVEHELTLKDVMNFKAGDIIPIELPEYIMMKIEDL 296

Query: 305 PVLTSQYGTLNEQYALRV 322
           P    + G   +  AL++
Sbjct: 297 PTYRCKMGRSRDNLALKI 314