Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  458 bits (1178), Expect = e-133
 Identities = 262/569 (46%), Positives = 361/569 (63%), Gaps = 22/569 (3%)

Query: 1   MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAA 60
           MT E+   FA LG+ + +++A++ +GYE+PSPIQ++ IP +L G D++G AQTG+GKTAA
Sbjct: 1   MTQEIG-GFAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAA 59

Query: 61  FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL 120
           F+LP+L  ID + K  Q L+LAPTRELA+QVA A   +SK M G+ VVA+YGG     QL
Sbjct: 60  FALPILSKIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQL 119

Query: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA 180
           +A+RQG QV+V TPGRL+DHL R +  LS +  LVLDEADEML++GF++D+E I   +P 
Sbjct: 120 KAIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPE 179

Query: 181 EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRF 240
             QT LFSAT+P +IR I  + +++PQ ++I +   T   I Q++  V+  +K +A++R 
Sbjct: 180 SRQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRL 239

Query: 241 LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300
           LE EDFDA I FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ +E LKDGRLDI+
Sbjct: 240 LEVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299

Query: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360
           +ATDVAARGLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ 
Sbjct: 300 VATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359

Query: 361 IERTMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVE 420
           IER     + E  +P A+ + + R+ K    +   +  ++   +  LL KL         
Sbjct: 360 IERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEA-THGELLDKLVADIGCSPR 418

Query: 421 TLAAALLKMAQGERPLIVA----ADPVFKSRPPRREFEERGDRGDRGDRRDRPVRSNDRP 476
            LAAALL+ A   + L +A      P+  +  PR          +R +R DRP RS DR 
Sbjct: 419 ALAAALLRKATNGQALTLAEVEREQPLVPTSSPR----------ERTERSDRPERSGDRE 468

Query: 477 ARDGDSPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHS 536
            R    P  E R        R  +G  DG+  R+++GAI NEG ++   IG I++  + S
Sbjct: 469 RR-APVPLAEGR-----ARCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFS 522

Query: 537 TIELPKGMPGEILSHFTRTRILNKPMNMQ 565
            +ELP+     +L     TR+  K + ++
Sbjct: 523 LVELPEDGLERLLGKLKDTRVGGKQLKLR 551