Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  502 bits (1292), Expect = e-146
 Identities = 286/629 (45%), Positives = 393/629 (62%), Gaps = 20/629 (3%)

Query: 9   FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHN 68
           F+DL L++ I+SALT++G+  P+PIQA  IP LL GRD LG AQTG+GKTAAFSLPLL+ 
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query: 69  IDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQ 128
           ++ S   PQ +V+APTRELA+QVA  + +  +++ G+ V+ +YGG     Q+RAL+ G  
Sbjct: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147

Query: 129 VVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFS 188
           +VVGTPGR+ D + R  L+L      +LDEADEML+MGF++DV  IM Q P   Q  LFS
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207

Query: 189 ATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEAEDFDA 248
           ATMP  ++ I  RF+++P+ V +  S  T   + Q YW V G+ K+EA+ R LE E+ DA
Sbjct: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267

Query: 249 AIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 308
           +I+FVRT+  T  +A+ L   G+ +AAL+GD+ Q+LRE+T++ +K G +DIL+ATDV AR
Sbjct: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327

Query: 309 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 368
           GLDV RI+ V NYDIP D ESY+HRIGRTGRAGR G+A+L V   + R+LR IER  + +
Sbjct: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387

Query: 369 IPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVETLAAALLK 428
           + E+++P  + + E RL K   ++    E S L+++  L+ KLQ + E+D  TLAA LLK
Sbjct: 388 MEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAAILLK 447

Query: 429 MAQGERPLI-VAADPVFKSRPPRREFEERGDRGDRGDRRDRPVRSNDRPARDGDSPRRER 487
             QG+RPL  V ADP+ ++    RE   R +R  R DRRD      DRPAR     R + 
Sbjct: 448 RQQGKRPLFYVGADPMIEAM--EREKSRRRER--RDDRRD-----GDRPARREFGGRDQE 498

Query: 488 RDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGE 547
               + + Y+++VGRD GV+V+ IVGA+ANE  ++   IG IKL   H+ ++LPK M  +
Sbjct: 499 NH--DWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSND 556

Query: 548 ILSHFTRTRILNKPMNMQLIGDAVPQAPRRDRPAGAGGERRGNGAPRPFNGERREGARGT 607
           + S   + RI  K      +G  V      D     GG RR  G PR   G R EG R  
Sbjct: 557 VSSKLRKLRIRQKE-----VGAVV--CDFDDFRESRGGARR-EGGPRREGGRRPEGNREG 608

Query: 608 GAPRTFSGDRREGASAAGDRRPPSRAPRR 636
           G      G R  G    G+ RP     RR
Sbjct: 609 GFRGGREGGREGGRGRGGEGRPFREGERR 637