Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 799 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  302 bits (773), Expect = 4e-86
 Identities = 195/529 (36%), Positives = 284/529 (53%), Gaps = 35/529 (6%)

Query: 8   SFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLH 67
           +FADLGLS   + A+ ++GY  P+PIQ + IP++  GRDVLG+AQTG+GKTA+F+LP++ 
Sbjct: 2   TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMID 61

Query: 68  NI---DASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALR 124
            +    A  + P+ L+LAPTRELA QV+E  T + K+   +++  L GG+  + Q + L 
Sbjct: 62  ILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK-LSMALLIGGESMNEQQKVLD 120

Query: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 184
           +G  V++ TPGRL+D  +RG++ L ++  LV+DEAD ML MGFI DVE I+A +P   QT
Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180

Query: 185 ALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEAE 244
             FSATM + IRR+   F+ +P+EVRI+ +      + Q+   V    K EAL + L  E
Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRE 240

Query: 245 DFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATD 304
               A IF   K     + ++L   G+   AL+GDM Q +R + LE+ K   + +++ +D
Sbjct: 241 TVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSD 300

Query: 305 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 364
           VAARG+DV  +S V N+D+P   E Y+HRIGRTGRAGR GRA       + + LR IE  
Sbjct: 301 VAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIENL 360

Query: 365 MKLTIP----------EVEIPTAEVLGERRLAKFAAKVQQQ-------LESSDLDQYRAL 407
           +  TIP           VE     V  + R  K   K + +         S+D ++ R L
Sbjct: 361 LGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAERPRPL 420

Query: 408 LAKLQPAEELDVETLAA--ALLKMAQGERPLIVAADPVFKSRPPRRE----------FEE 455
             +    ++  VE  A    L +    ERP +        +  P  +            E
Sbjct: 421 APERAANDQAPVERPAVEKTLAEQPVAERPPVERGQAERTAERPSSDRTNERASSDRSSE 480

Query: 456 RGDRGDRGDRRDRPVRS-NDRPARDGDSPRRERRDAGEMELYRIEVGRD 503
           R      GD R R  R  +DR A  G  PRR   D  + E+  + +G D
Sbjct: 481 RASSERNGDDRGRGGRGRDDRSAARGRRPRRWEDDP-QSEVMEMRIGDD 528