Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  308 bits (788), Expect = 5e-88
 Identities = 182/499 (36%), Positives = 276/499 (55%), Gaps = 41/499 (8%)

Query: 8   SFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLH 67
           SF  LGLSAPI+ A+ D GY+ PSPIQA+ IP +LSG+DV+  AQTG+GKTA F+LPLL 
Sbjct: 2   SFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLE 61

Query: 68  NID----ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 123
            +     A  K  + LVL PTRELA Q+AE++T + +H+  +    ++GG     Q+  L
Sbjct: 62  LLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLP-LRSAVVFGGVGISPQISQL 120

Query: 124 RQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQ 183
           ++G  ++V TPGRLLD  ++  ++ S L  LVLDEAD ML MGFI D++ I+A +P + Q
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 184 TALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEA 243
             +FSAT  + IR + +  + +P E+ +    +T   + Q    V   +K+ ALV+ ++ 
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ 240

Query: 244 EDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIAT 303
            D+   ++F RTK+    +A+ LE  G ++AA++G+ +Q  R + L   K G + +L+AT
Sbjct: 241 GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT 300

Query: 304 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 363
           D+AARGLD++++  VVN+D+P   E YVHRIGRTGRAG  G+A+  V + E +LL +IER
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER 360

Query: 364 TMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVETLA 423
            +   +P  E+   E            K   Q +               P          
Sbjct: 361 LIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKG--------------PRNPKPKSNSQ 406

Query: 424 AALLKMAQGERPLIVAADPVFKSRPPRREFEERGDRGDRGDRRDRPVRSNDRPA------ 477
            +  + + G+R          K+  PRR  + +G++  +G RR        +PA      
Sbjct: 407 RSSNRSSNGQRS--------DKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQA 458

Query: 478 --------RDGDSPRRERR 488
                   RDG++P R RR
Sbjct: 459 QNQGKQEHRDGNAPARRRR 477