Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  575 bits (1481), Expect = e-168
 Identities = 308/593 (51%), Positives = 408/593 (68%), Gaps = 10/593 (1%)

Query: 6   ETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPL 65
           E +F +LGLS P++ AL +LGYEKP+PIQA  I  L++G+D+LG AQTG+GKT AF+LPL
Sbjct: 5   EKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPL 64

Query: 66  LHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 125
           L+ ID +   PQILVLAPTRELAVQVAEA   +SK M G++V+ +YGGQ    QL ALR+
Sbjct: 65  LNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRR 124

Query: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185
           GPQ+VVGTPGR++DH++RGTL L  L+ LVLDEADEML+MGFI+D+E I+   P E Q A
Sbjct: 125 GPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLA 184

Query: 186 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEAED 245
           LFSATMPE I+R+  ++++ P  + I +S TT   I Q +  V    K EALVR LE E+
Sbjct: 185 LFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVEN 244

Query: 246 FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDV 305
            +  IIFVRT+N+ +E+AE LE  GY+S+ L+GDMNQ  RE+ +++LK G+LDILIATDV
Sbjct: 245 TEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDV 304

Query: 306 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 365
           AARGLDVERI  V+NYDIP D+E+YVHRIGRTGRAGR G A+LFV +RE R+LR IER  
Sbjct: 305 AARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERAT 364

Query: 366 KLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVETLAAA 425
           K  I  + +P+ E + ERRL++   +V   +++  LD     +A+L    E+D E LAAA
Sbjct: 365 KSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQLCQQLEVDTEVLAAA 424

Query: 426 LLKMAQGERPLIVAADPVFKSRPPRREFEERGDRGDRGDRRDRPVR-SNDRPARDGDSPR 484
           LL M Q ERPL     P+ + +   R+     DRGDR DR  R  R S   PA  G +  
Sbjct: 425 LLNMVQQERPL--QLPPIQERQRDSRDERNSRDRGDRSDRAPRGRRESRPTPANLGQADT 482

Query: 485 RERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGM 544
            +     +M  Y ++VGRD GV V +IVGA+ANE +I SRYIG I+LF   ++I+LP+GM
Sbjct: 483 LKDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSIDLPEGM 542

Query: 545 PGEILSHFTRTRILNKPMNMQLIGDAV------PQAPRRDRPAG-AGGERRGN 590
           P ++L H  + R+  KP+N++  G  +       +APRR +P G     R+GN
Sbjct: 543 PKDVLQHLKKVRVCGKPLNIREAGSEIVNASDDNRAPRRRKPVGERKSHRKGN 595